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 Hepatovirus F seqs

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Genus: Hepatovirus

Species: Hepatovirus F

type: hepatovirus F1
5' UTR VP4 VP2 VP3 VP1 pX 2B 2C 3A 3B 3C 3D 3' UTR
type: hepatovirus F2  
5' UTR VP4 VP2 VP3 VP1 pX 2B 2C 3A 3B 3C 3D 3' UTR

(White areas indicate genes which haven't yet been sequenced completely; grey areas are where only partial sequences exist)

Virus Strain Region Length

Accession No.

Reference Comments

Hepatovirus F1 (HepV-F1)

HepV-F1 rat/KEF121Sigmas2012 (Mexico) CG 7563 KT452685 Drexler et al., 2015 Sigmodon mascotensis
             

Hepatovirus F2 (HepV-F2)
aka Marmota himalayana hepatovirus (MHHV)

MHHV woodchuck/2ID/China/2013 CG 7569 KT229611 Yu et al., 2016  
MHHV woodchuck/3ID/China/2013 CG 7569 KT229612 Yu et al., 2016  
MHHV woodchuck/1B/China/2013 VP1 918 KT229577 Yu et al., 2016  
MHHV woodchuck/1H/China/2013 VP1 918 KT229578 Yu et al., 2016  
MHHV woodchuck/1F/China/2013 VP1 918 KT229579 Yu et al., 2016  
MHHV woodchuck/2B/China/2013 VP1 918 KT229580 Yu et al., 2016  
MHHV woodchuck/2H/China/2013 VP1 918 KT229581 Yu et al., 2016  
MHHV woodchuck/2F/China/2013 VP1 918 KT229582 Yu et al., 2016  
MHHV woodchuck/3B/China/2013 VP1 918 KT229583 Yu et al., 2016  
MHHV woodchuck/3H/China/2013 VP1 918 KT229584 Yu et al., 2016  
MHHV woodchuck/3F/China/2013 VP1 918 KT229585 Yu et al., 2016  
MHHV woodchuck/4B/China/2013 VP1 918 KT229586 Yu et al., 2016  
MHHV woodchuck/4H/China/2013 VP1 918 KT229587 Yu et al., 2016  
MHHV woodchuck/4F/China/2013 VP1 918 KT229588 Yu et al., 2016  
MHHV woodchuck/5B/China/2013 VP1 918 KT229589 Yu et al., 2016  
MHHV woodchuck/5H/China/2013 VP1 918 KT229590 Yu et al., 2016  
MHHV woodchuck/5F/China/2013 VP1 918 KT229591 Yu et al., 2016  
MHHV woodchuck/6B/China/2013 VP1 918 KT229592 Yu et al., 2016  
MHHV woodchuck/6H/China/2013 VP1 918 KT229593 Yu et al., 2016  
MHHV woodchuck/6F/China/2013 VP1 918 KT229594 Yu et al., 2016  
MHHV woodchuck/7B/China/2013 VP1 918 KT229595 Yu et al., 2016  
MHHV woodchuck/7H/China/2013 VP1 918 KT229596 Yu et al., 2016  
MHHV woodchuck/7F/China/2013 VP1 918 KT229597 Yu et al., 2016  
MHHV woodchuck/17B/China/2013 VP1 918 KT229598 Yu et al., 2016  
MHHV woodchuck/17H/China/2013 VP1 918 KT229599 Yu et al., 2016  
MHHV woodchuck/18H/China/2013 VP1 918 KT229600 Yu et al., 2016  
MHHV woodchuck/18B/China/2013 VP1 918 KT229601 Yu et al., 2016  
MHHV woodchuck/8F/China/2013 VP1 918 KT229602 Yu et al., 2016  
MHHV woodchuck/9F/China/2013 VP1 918 KT229603 Yu et al., 2016  
MHHV woodchuck/10F/China/2013 VP1 918 KT229604 Yu et al., 2016  
MHHV woodchuck/11F/China/2013 VP1 918 KT229605 Yu et al., 2016  
MHHV woodchuck/12F/China/2013 VP1 918 KT229606 Yu et al., 2016  
MHHV woodchuck/13F/China/2013 VP1 918 KT229607 Yu et al., 2016  
MHHV woodchuck/14F/China/2013 VP1 918 KT229608 Yu et al., 2016  
MHHV woodchuck/15F/China/2013 VP1 918 KT229609 Yu et al., 2016  
MHHV woodchuck/16F/China/2013 VP1 918 KT229610 Yu et al., 2016  
             
CG = complete genome; (p) = partial gene sequence

References

Drexler, J.F., Corman, V.M., Lukashev, A.N., van den Brand, J.M.A., Gmyl, A.P., Brünink, S., Rasche, A., Seggewiβ, N., Feng, H., Leijten, L.M., Vallo, P., Kuiken, T., Dotzauer, A., Ulrich, R.G., Lemon, S.M., Drosten, C. and the Hepatovirus Ecology Consortium. (2015). Evolutionary origins of hepatitis A virus in small mammals. Proc. Natl. Acad. Sci. USA 2015; published ahead of print November 2, 2015, doi:10.1073/pnas.1516992112

Yu, J.M., Li, L.L., Zhang, C.Y., Lu, S., Ao, Y.Y., Gao, H.C., Xie, Z.P., Xie, G.C., Sun, X.M., Pang, L.L., Xu, J.G., Lipkin, W.I. and Duan, Z.J. (2016). A novel hepatovirus identified in wild woodchuck Marmota himalayana. Sci. Rep. 6: 22361.

 
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