| |
Genus: Sicinivirus
Species: Sicinivirus A
Type: sicinivirus A1
(SiV-A1) |
|
| 5'
UTR |
L |
VP0 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
Type: sicinivirus A2
(SiV-A2) |
|
| 5'
UTR |
L |
VP0 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
Type: sicinivirus A3
(SiV-A3) |
|
| 5'
UTR |
L |
VP0 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
Type: sicinivirus A4
(SiV-A4) |
|
| 5'
UTR |
L |
VP0 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
Type: sicinivirus A5
(SiV-A5) |
|
| 5'
UTR |
L |
VP0 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
Proposed type classification (N.J. Knowles,
unpublished data)
(White areas indicate genes which haven't yet been
sequenced completely;
grey areas are where only partial sequences exist)
| Virus |
Strain |
Region |
Length |
Accession No. |
Reference |
Comments |
sicinivirus A1 (SiV-1)
|
|
SiV-1 |
ch/UCC001/Eire |
CG(p) |
9276 |
KF741227 |
Bullman et al., 2014 |
5' end missing |
|
SiV-1 |
ch/UCC1/Eire/2012 |
CG(p) |
8334 |
KF366619 |
Bullman et al., unpub. |
5' end missing |
|
SiV-1 |
ch/Pf-CHK1/HUN/2013 |
CG(p) |
9883 |
KT880665 |
Boros et al., 2016 |
|
|
|
|
|
|
|
|
|
sicinivirus A2 (SiV-2)
|
|
SiV-2 |
ch/JSY/China/2014 |
CG |
9809 |
KP779642 |
Zhou et al., 2015 |
|
|
|
|
|
|
|
|
|
sicinivirus A3 (SiV-3) (aka chicken picornavirus
1)
|
|
SiV-3 |
ch/55C/Hong Kong/2008 |
CG(p) |
8287 |
KF979331 |
Lau et al., 2014 |
5' end missing |
|
SiV-3 |
ch/RS/BR/2015/2 |
CG(p) |
9128 |
KY069113 |
Lima et al., unpub. |
5' end missing |
|
|
|
|
|
|
|
|
sicinivirus A4 (SiV-4) (aka chicken picornavirus
1)
|
|
SiV-4 |
ch/100C/Hong Kong/2009 |
CG(p) |
8331 |
KF979332 |
Lau et al., 2014 |
5' end missing |
|
|
|
|
|
|
|
|
sicinivirus A5 (SiV-5)
|
|
SiV-5 |
ch/RS/BR/2015/1 |
CG(p) |
9253 |
KY069112 |
Lima et al., unpub. |
5' end missing |
|
|
|
|
|
|
|
|
sicinivirus 10 (candiate new type)
|
|
SiV |
ch/SiV 10 |
VP0(p)-2A(p) |
2557 |
KX100567 |
Morgan et al., unpub. |
|
|
|
|
|
|
|
|
|
unclassified siciniviruses
|
|
SiV |
ch/RS/BR/2015/7R-2 |
|
1023 |
MG846466 |
Lima et al., 2018 |
|
|
SiV |
ch/RS/BR/2015/7R-3 |
|
1025 |
MG846467 |
Lima et al., 2018 |
|
|
SiV |
ch/RS/BR/2015/7R-1 |
|
1065 |
MG846468 |
Lima et al., 2018 |
|
|
SiV |
ch/RS/BR/2015/2R-5 |
|
1073 |
MG846469 |
Lima et al., 2018 |
|
|
SiV |
ch/RS/BR/2015/2S-2 |
|
1131 |
MG846470 |
Lima et al., 2018 |
|
|
SiV |
ch/RS/BR/2015/2R-3 |
|
1149 |
MG846471 |
Lima et al., 2018 |
|
|
SiV |
ch/RS/BR/2015/1R-2 |
|
1236 |
MG846472 |
Lima et al., 2018 |
|
|
SiV |
ch/RS/BR/2015/2R-4 |
|
1502 |
MG846473 |
Lima et al., 2018 |
|
|
SiV |
ch/RS/BR/2015/3S-4 |
|
1548 |
MG846474 |
Lima et al., 2018 |
|
|
SiV |
ch/RS/BR/2015/2R-2 |
|
1696 |
MG846475 |
Lima et al., 2018 |
|
|
SiV |
ch/RS/BR/2015/3S-3 |
|
1723 |
MG846476 |
Lima et al., 2018 |
|
|
SiV |
ch/RS/BR/2015/3S-2 |
|
2587 |
MG846477 |
Lima et al., 2018 |
|
|
SiV |
ch/RS/BR/2015/2R-1 |
2C(p) to 3'UTR |
3832 |
MG846478 |
Lima et al., 2018 |
|
|
SiV |
ch/RS/BR/2015/3S-1 |
5'UTR(p) to VP1 |
4486 |
MG846479 |
Lima et al., 2018 |
|
|
SiV |
ch/RS/BR/2015/2S-1 |
CG(p) |
8710 |
MG846480 |
Lima et al., 2018 |
|
|
SiV |
ch/RS/BR/2015/4R |
CG(p) |
9075 |
MG846481 |
Lima et al., 2018 |
|
|
SiV |
ch/RS/BR/2015/3R |
CG(p) |
9240 |
MG846482 |
Lima et al., 2018 |
|
|
SiV |
ch/RS/BR/2015/1R-1 |
CG(p) |
9270 |
MG846483 |
Lima et al., 2018 |
|
|
SiV |
ch/RS/BR/2015/7S |
CG(p) |
9471 |
MG846484 |
Lima et al., 2018 |
|
|
SiV |
ch/RS/BR/2015/4S |
CG(p) |
9547 |
MG846485 |
Lima et al., 2018 |
|
|
SiV |
ch/RS/BR/2015/5S |
CG(p) |
9711 |
MG846486 |
Lima et al., 2018 |
|
|
SiV |
ch/RS/BR/2015/5R |
CG(p) |
9874 |
MG846487 |
Lima et al., 2018 |
|
|
SiV |
ch/UT-G-Khajehnasiri/Iran/2017 |
CG(p) |
9277 |
MT215487 |
Zamani et al., unpub. |
|
|
SiV |
ch/UT-G-Masoumi/Iran/2017 |
CG(p) |
9884 |
MT225405 |
Zamani et al., unpub. |
|
|
SiV |
ch/GA/1472/2004/USA |
CG(p) |
9775 |
MN873045 |
Goraichuk et al., unpub. |
|
|
SiV |
ch/GA/1477/2005/USA |
CG(p) |
9687 |
MN873046 |
Goraichuk et al., unpub. |
|
|
SiV |
ch/GA/1478/2003/USA |
CG(p) |
9670 |
MN873047 |
Goraichuk et al., unpub. |
|
|
SiV |
ch/GA/1479/2004/USA |
CG(p) |
9806 |
MN873048 |
Goraichuk et al., unpub. |
|
|
SiV |
ch/B1203/Mexico/2019 |
CG(p) |
9704 |
MT345550 |
Parris, unpub. |
gap of 202 nt in P3 |
|
|
|
|
|
|
|
|
Pacific black duck sicini-like virus
|
|
|
pbd/4111nt/PBD05.18-AU-2018 |
|
4111 |
MT247839 |
Vibin et al., 2020 |
Anas superciliosa |
|
|
pbd/4792nt/PBD05.18-AU-2018 |
|
4792 |
MT247840 |
Vibin et al., 2020 |
Anas superciliosa |
|
|
|
|
|
|
|
|
CG = complete genome
(p) = partial gene sequence |
Boros, A., Pankovics, P., Adonyi,
A., Fenyvesi, H., Day, J.M., Phan, T.G., Delwart, E. and Reuter, G.
(2016). A diarrheic chicken simultaneously co-infected with multiple
picornaviruses: Complete genome analysis of avian picornaviruses
representing up to six genera. Virology 489: 63-74. Epub 2015 Dec
18.
Bullman, S., Kearney, K., O'Mahony, M., Kelly, L., Whyte, P., Fanning, S. and Morgan, J.G.
(2014). Identification and genetic characterisation of a novel
picornavirus from chickens. J. Gen. Virol. 95: 1094-1103.
Lau, S.K., Woo,
P.C., Yip, C.C., Li, K.S., Fan, R.Y., Bai, R., Huang, Y., Chan, K.H. and
Yuen, K.Y. (2014). Chickens host diverse picornaviruses originated from
potential interspecies transmission with recombination. J. Gen. Virol.
95: 1929-1944.
Lima DA, Cibulski SP, Tochetto C,
Varela APM, Finkler F, Teixeira TF, Loiko MR, Cerva C, Junqueira DM,
Mayer FQ, Roehe PM. The intestinal virome of malabsorption
syndrome-affected and unaffected broilers through shotgun metagenomics.
Virus Res. 2018 Dec 10. pii: S0168-1702(18)30482-9. doi:
10.1016/j.virusres.2018.12.005. [Epub ahead of print] PubMed PMID:
30543873.
Vibin J, Chamings A, Klaassen M,
Bhatta TR, Alexandersen S. Metagenomic characterisation of avian
parvoviruses and picornaviruses from Australian wild ducks. Sci Rep.
2020 Jul 30;10(1):12800. doi: 10.1038/s41598-020-69557-z. PMID:
32733035; PMCID: PMC7393117.
Zhou, H., Zhu, S., Quan, R., Wang, J.,
Wei, L., Yang, B., Xu, F., Wang, J., Chen, F. and Liu, J. (2015).
Identification and genome characterization of the first sicinivirus
isolate from chickens in mainland China by using viral metagenomics.
PLoS One 10: e0139668.
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