The
Picornavirus
Pages
 Pasivirus A seqs

Child level

Same level

Home
Up
Genus: Pasivirus

Species: Pasivirus A

Type: pasivirus A1  (PaV-A1)
5' UTR VP0 VP3 VP1 2A1 2A2 2B 2C 3A 3B1 3B2 3C 3D 3' UTR
Type: pasivirus A2  (PaV-A2)
5' UTR VP0 VP3 VP1 2A1 2A2 2B 2C 3A 3B1 3B2 3C 3D 3' UTR
Type: pasivirus A3  (PaV-A3)
5' UTR VP0 VP3 VP1 2A1 2A2 2B 2C 3A 3B1 3B2 3C 3D 3' UTR
Type: pasivirus A4  (PaV-A4)
5' UTR VP0 VP3 VP1 2A1 2A2 2B 2C 3A 3B1 3B2 3C 3D 3' UTR

(White areas indicate genes which haven't yet been sequenced completely; grey areas are where only partial sequences exist)

 
Virus Strain Region Length Accession no. Reference Comments

Pasivirus A1 (PaV-A1)

PaV-A1

swine/France/2011

CG(p)

6916

JQ316470

Sauvage et al., 2012

PaV-A1 sw/GER/L00721/2014 CG(p) 6917 LT898442 Pohlmann, unpub.  
             

Pasivirus A2 (PaV-A2)

PaV-A2

swine/China/2010

CG(p)

6858

JX491648

Yu et al., 2013b  
             

Pasivirus A3 (PaV-A3)

PaV-A3 swine/Zsana1/2013/HUN CG 6938 KM259923 Boros et al., 2015  
PaV-A3 sw/GER/L00799-K11_14-01/2014 CG(p) 6924 LT898429 Pohlmann, unpub.  
             

Pasivirus A4? (PaV-A4)

PaV-A4? sw/GER/L01061-K07_15-03/2015 CG(p) 6905 LT898422 Pohlmann, unpub.  
PaV-A4? sw/US/17-50816IA60467-1/2001 CG(p) 6695 MG674090 Guo et al., 2018  
             

Pasivirus A? (PaV-A?)

PaV-A?

swine/1st_LV-513

2C(p)

317

JX560993

Yu et al., 2013a

 

PaV-A?

swine/1st_LV-516

2C(p)

317

JX560994

Yu et al., 2013a

 

PaV-A?

swine/1st_LV-519

2C(p)

317

JX560995

Yu et al., 2013a  

PaV-A?

swine/1st_LV-533

2C(p)

317

JX560996

Yu et al., 2013a  

PaV-A?

swine/1st_LV-562

2C(p)

317

JX560997

Yu et al., 2013a  

PaV-A?

swine/1st_LV-566

2C(p)

317

JX560998

Yu et al., 2013a  

PaV-A?

swine/1st_LV-568

2C(p)

317

JX560999

Yu et al., 2013a  

PaV-A?

swine/1st_LV-581

2C(p)

317

JX561000

Yu et al., 2013a  

PaV-A?

swine/1st_LV-584

2C(p)

317

JX561001

Yu et al., 2013a  

PaV-A?

swine/1st_LV-586

2C(p)

317

JX561002

Yu et al., 2013a  

PaV-A?

swine/1st_LV-587

2C(p)

317

JX561003

Yu et al., 2013a  

PaV-A?

swine/1st_LV-591

2C(p)

317

JX561004

Yu et al., 2013a  

PaV-A?

swine/1st_LV-597

2C(p)

317

JX561005

Yu et al., 2013a  

PaV-A?

swine/1st_LV-627

2C(p)

317

JX561006

Yu et al., 2013a  

PaV-A?

swine/1st_LV-630

2C(p)

317

JX561007

Yu et al., 2013a  

PaV-A?

swine/1st_LV-631

2C(p)

317

JX561008

Yu et al., 2013a  

PaV-A?

swine/1st_LV-634

2C(p)

317

JX561009

Yu et al., 2013a  

PaV-A?

swine/1st_LV-638

2C(p)

317

JX561010

Yu et al., 2013a  

PaV-A?

swine/1st_LV-641

2C(p)

317

JX561011

Yu et al., 2013a  

PaV-A?

swine/1st_LV-649

2C(p)

317

JX561012

Yu et al., 2013a  

PaV-A?

swine/1st_LV-654

2C(p)

317

JX561013

Yu et al., 2013a  

PaV-A?

swine/1st_LV-655

2C(p)

317

JX561014

Yu et al., 2013a  

PaV-A?

swine/1st_LV-680

2C(p)

317

JX561015

Yu et al., 2013a  

PaV-A?

swine/1st_LV-681

2C(p)

317

JX561016

Yu et al., 2013a  

PaV-A?

swine/1st_LV-683

2C(p)

317

JX561017

Yu et al., 2013a  

PaV-A?

swine/1st_LV-700

2C(p)

317

JX561018

Yu et al., 2013a  

PaV-A?

swine/1st_LV-703

2C(p)

317

JX561019

Yu et al., 2013a  

PaV-A?

swine/1st_LV-709

2C(p)

317

JX561020

Yu et al., 2013a  

PaV-A?

swine/1st_LV-721

2C(p)

315

JX561021

Yu et al., 2013a  

PaV-A?

swine/1st_LV-725

2C(p)

317

JX561022

Yu et al., 2013a  

PaV-A?

swine/1st_LV-740

2C(p)

317

JX561023

Yu et al., 2013a  

PaV-A?

swine/1st_LV-760

2C(p)

317

JX561024

Yu et al., 2013a  

PaV-A?

swine/1st_LV-763

2C(p)

316

JX561025

Yu et al., 2013a  

PaV-A?

swine/1st_LV-764

2C(p)

317

JX561026

Yu et al., 2013a  

PaV-A?

swine/1st_LV-792

2C(p)

317

JX561027

Yu et al., 2013a  

PaV-A?

swine/2nd_LV-568

2C(p)

286

JX561028

Yu et al., 2013a  

PaV-A?

swine/2nd_LV-655

2C(p)

284

JX561029

Yu et al., 2013a  

PaV-A?

swine/2nd_LV-658

2C(p)

286

JX561030

Yu et al., 2013a  

PaV-A?

swine/2nd_LV-684

2C(p)

284

JX561031

Yu et al., 2013a  

PaV-A?

swine/2nd_LV-698

2C(p)

286

JX561032

Yu et al., 2013a  

PaV-A?

swine/2nd_LV-700

2C(p)

286

JX561033

Yu et al., 2013a  

PaV-A?

swine/2nd_LV-703

2C(p)

286

JX561034

Yu et al., 2013a  

PaV-A?

swine/2nd_LV-735

2C(p)

286

JX561035

Yu et al., 2013a  
PaV-A? swine/21/China/2010 3C(p)/3D(p) 334 KC138856 Yu et al., 2013b  
PaV-A? swine/30/China/2010 3C(p)/3D(p) 334 KC138857 Yu et al., 2013b  
PaV-A? swine/33/China/2010 3C(p)/3D(p) 334 KC138858 Yu et al., 2013b  
PaV-A? swine/34/China/2010 3C(p)/3D(p) 334 KC138859 Yu et al., 2013b  
PaV-A? swine/35/China/2010 3C(p)/3D(p) 334 KC138860 Yu et al., 2013b  
PaV-A? swine/58/China/2010 3C(p)/3D(p) 334 KC138861 Yu et al., 2013b  
PaV-A? swine/59/China/2010 3C(p)/3D(p) 334 KC138862 Yu et al., 2013b  
PaV-A? swine/61/China/2010 3C(p)/3D(p) 334 KC138863 Yu et al., 2013b  
PaV-A? swine/62/China/2010 3C(p)/3D(p) 334 KC138864 Yu et al., 2013b  
PaV-A? swine/64/China/2010 3C(p)/3D(p) 334 KC138865 Yu et al., 2013b  
PaV-A? swine/66/China/2010 3C(p)/3D(p) 334 KC138866 Yu et al., 2013b  
PaV-A? swine/68/China/2010 3C(p)/3D(p) 334 KC138867 Yu et al., 2013b  
PaV-A? swine/147/China/2010 3C(p)/3D(p) 334 KC138868 Yu et al., 2013b  
PaV-A? swine/218/China/2010 3C(p)/3D(p) 334 KC138869 Yu et al., 2013b  
PaV-A? swine/228/China/2010 3C(p)/3D(p) 334 KC138870 Yu et al., 2013b  
PaV-A? swine/230/China/2010 3C(p)/3D(p) 334 KC138871 Yu et al., 2013b  
PaV-A? swine/233/China/2010 3C(p)/3D(p) 334 KC138872 Yu et al., 2013b  
PaV-A? swine/236/China/2010 3C(p)/3D(p) 334 KC138873 Yu et al., 2013b  
PaV-A? swine/280/China/2010 3C(p)/3D(p) 334 KC138874 Yu et al., 2013b  
PaV-A? swine/330/China/2010 3C(p)/3D(p) 334 KC138875 Yu et al., 2013b  
PaV-A? swine/281/China/2010 3C(p)/3D(p) 334 KC138876 Yu et al., 2013b  
PaV-A? swine/282/China/2010 3C(p)/3D(p) 334 KC138877 Yu et al., 2013b  
PaV-A? swine/283/China/2010 3C(p)/3D(p) 334 KC138878 Yu et al., 2013b  
PaV-A? swine/284/China/2010 3C(p)/3D(p) 334 KC138879 Yu et al., 2013b  
PaV-A? swine/297/China/2010 3C(p)/3D(p) 334 KC138880 Yu et al., 2013b  
PaV-A? swine/298/China/2010 3C(p)/3D(p) 334 KC138881 Yu et al., 2013b  
PaV-A? swine/299/China/2010 3C(p)/3D(p) 334 KC138882 Yu et al., 2013b  
PaV-A? swine/325/China/2010 3C(p)/3D(p) 334 KC138883 Yu et al., 2013b  
PaV-A? swine/349/China/2010 3C(p)/3D(p) 334 KC138884 Yu et al., 2013b  
PaV-A? swine/353/China/2010 3C(p)/3D(p) 334 KC138885 Yu et al., 2013b  
PaV-A? swine/354/China/2010 3C(p)/3D(p) 334 KC138886 Yu et al., 2013b  
PaV-A? swine/355/China/2010 3C(p)/3D(p) 334 KC138887 Yu et al., 2013b  
PaV-A? swine/226/China/2010 3C(p)/3D(p) 334 KC138888 Yu et al., 2013b  
PaV-A? swine/279/China/2010 3C(p)/3D(p) 334 KC138889 Yu et al., 2013b  
PaV-A? swine/281/China/2010 3C(p)/3D(p) 334 KC138890 Yu et al., 2013b  
PaV-A? swine/325/China/2010 3C(p)/3D(p) 334 KC138891 Yu et al., 2013b  
PaV-A? swine/Rom1/Romania/2013 5'UTR(p)-VP0(p) 531 KJ780020 Zaulet et al., unpub.  
PaV-A? swine/Rom2/Romania/2013 5'UTR(p)-VP0(p) 531 KJ780021 Zaulet et al., unpub.  
PaV-A? swine/Rom3/Romania/2013 5'UTR(p)-VP0(p) 422 KJ780022 Zaulet et al., unpub.  
PaV-A? swine/Rom4/Romania/2013 VP1(p)-2A2(p) 403 KJ780023 Zaulet et al., unpub.  
PaV-A? swine/Rom5/Romania/2013 3A(p)-3C(p) 619 KJ780024 Zaulet et al., unpub.  
             
CG = complete genome
(p) = partial gene sequence

  References

Boros, ┴., Fenyvesi, H., Pankovics, P., Birˇ, H., Phan, T.G., Delwart, E. and Reuter, G. (2015). Secondary structure analysis of swine pasivirus (family Picornaviridae) RNA reveals a type-IV IRES and a parechovirus-like 3' UTR organization. Arch. Virol. 160: 1363-1366.

Guo, B., Kim, H., Zheng, Y., Shen, H., Pogranichniy, R.M., Schwartz, K.J., Li, G. and Yoon, K.-J. (2018). Genomic sequence of a swine pasivirus type 1 strain identified in U.S. swine. Genome Announc 6: e01569-17.

Sauvage, V., Ar Gouilh, M., Cheval, J., Muth, E., Pariente, K., Burguiere, A., Caro, V., Manuguerra, J.C. and Eloit, M. (2012). A member of a new Picornaviridae genus is shed in pig feces. J. Virol. 86: 10036-10046. Epub 2012 Jul 11.

Yu, J.M., Li, J.S., Ao, Y.Y. and Duan, Z.J. (2013a). Detection of novel viruses in porcine fecal samples from China. Virol J. 10(1): 39 [Epub 2013 Jan 30].

Yu, J.M., Li, X.Y., Ao, Y.Y., Li, L.L., Liu, N., Li, J.S. and Duan, Z.J. (2013b). Identification of a novel picornavirus in healthy piglets and seroepidemiological evidence of its presence in humans. PLoS One. 8(8):e70137.


Copyright © 2006 - The Pirbright Institute, UK. All Rights Reserved.