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The genome sequences of six picornaviruses
of red-crowned cranes (Grus
japonensis) have been deposited on GenBank (Wang et al.,
2018).
|
Strain |
Length |
Accession |
Most
closely related genus
(3Dpol aa idenity) |
|
yc-1/China/2014 |
7443 |
KY312540 |
Hepatovirus
(40%) |
|
yc-2/China/2014 |
7073 |
KY312541 |
Hepatovirus (40%) |
|
yc-3/China/2014 |
6912 |
KY312542 |
Avihepatovirus (54%) |
|
yc-4/China/2014 |
6809 |
KY312543 |
Avihepatovirus (53%) |
|
yc-5/China/2014 |
7917 |
KY312544 |
Avihepatovirus (51%) |
|
yc-6/China/2014 |
7104 |
KY312545 |
Avihepatovirus (53%) |
Each of the sequences (based on comparisons of the polyproteins) are
distantly related to each other. For example, the approximate amino
acid identity between yc-1 and yc-2 is only 32%; yc3 and yc-4 is
41%; yc4 and yc-5 is 37%; yc-5 and yc-6 is 38%; yc-3 and yc-5 is
71%; yc-3 and yc-6 is 38%; yc-4 and yc-6 is 46%.
References
Wang Y, Yang S, Liu D, Zhou C, Li W, Lin Y, Wang X, Shen Q, Wang H,
Li C, Zong M, Ding Y, Song Q, Deng X, Qi D, Zhang W, Delwart E. The
fecal virome of red-crowned cranes. Arch Virol. 2018 Sep 17. doi:
10.1007/s00705-018-4037-x. [Epub ahead of print] PubMed PMID:
30225519.
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