Cadicivirus A seqs

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Genus: Dicipivirus

Species: Cadicivirus A

Type: canine picodicistrovirus 1 (CaPdV-1)

5' UTR VP4 VP2 VP3 VP1 IGR 2A 2B 2C 3A 3B 3C 3D 3' UTR

(White areas indicate genes which haven't yet been sequenced completely; grey areas are where only partial sequences exist)

Virus	Strain	Region	Length	Accession no.	Reference	Comments
Canine picodicistrovirus 1 (CaPdV-1)
CaPdV	dog/209/Hong Kong/2008	CG	8785	JN819202	Woo et al., 2012
CaPdV	dog/236/Hong Kong/2008	CG	8784	JN819203	Woo et al., 2012
CaPdV	dog/244U/Hong Kong/2008	CG	8784	JN819204	Woo et al., 2012
CaPdV	fox/Tod virus-1/AUS/2019	2C-3C	2058	MT833880	Campbell et al., 2020	Vulpes vulpes
CaPdV	fox/Tod virus-2/AUS/2019	2A-3D	4263	MT833876	Campbell et al., 2020	Vulpes vulpes
CaPdV	raccoon dog/RDX/CHA/2015	CG(p)	8715	MT498598	Yang et al., 2021	Nyctereutes procyonoides

CG = complete genome (p) = partial gene sequence

References

Campbell SJ, Ashley W, Gil-Fernandez M, Newsome TM, Di Giallonardo F, Ortiz-Baez AS, Mahar JE, Towerton AL, Gillings M, Holmes EC, Carthey AJR, Geoghegan JL. Red fox viromes in urban and rural landscapes. Virus Evol. 2020 Aug 25;6(2):veaa065. doi: 10.1093/ve/veaa065. PMID: 33365150; PMCID: PMC7744383.

Woo, P.C., Lau, S.K., Choi, G.K., Huang, Y., Teng, J.L., Tsoi, H.W., Tse, H., Yeung, M.L., Chan, K.H., Jin, D.Y. and Yuen, K.Y. (2012). Natural occurrence and characterization of two internal ribosome entry site elements in a novel virus, canine picodicistrovirus, in the picornavirus-like superfamily. J. Virol. 86: 2797-2808. Epub 2011 Dec 28.

Yang S, He Y, Chen X, Kalim U, Wang Y, Yang S, Qi H, Cheng H, Lu X, Wang X, Shen Q, Zhang W. Viral Metagenomics Reveals Diverse Viruses in the Feces Samples of Raccoon Dogs. Front Vet Sci. 2021 Jul 12;8:693564. doi: 10.3389/fvets.2021.693564. PMID: 34322538; PMCID: PMC8311183.

Canine picodicistrovirus 1 (CaPdV-1)