| |
Genus: Megrivirus
Species: Megrivirus C
| Type: megrivirus C1 |
|
|
5' UTR |
VP0 |
VP3 |
VP1 |
2A1 |
2A2 |
2A3 |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Type: megrivirus C2 |
|
|
5' UTR |
VP0 |
VP3 |
VP1 |
2A1 |
2A2 |
2A3 |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
(White areas indicate genes which haven't yet been
sequenced completely;
grey areas are where only partial sequences exist)
| Virus |
Strain |
Region |
Length |
Accession No. |
Reference |
Comments |
megrivirus C1 (MeV-C1)
|
|
MeV-C1 |
ch/B21-CHV/2012/HUN |
CG |
9560 |
KF961186 |
Boros et al., 2014 |
aka chicken megrivirus |
|
MeV-C1 |
ch/CHK-IV-CHV/2013/HUN |
CG |
9566 |
KF961187 |
Boros et al., 2014 |
aka chicken megrivirus |
|
MeV-C1 |
ch/CHK148/USA/2010 |
3D(p)+3'UTR |
1312 |
JF424831 |
Farkas et al., 2012 |
aka chicken megrivirus |
|
MeV-C1 |
ch/QIA01/SKR/2003 |
CG(p) |
8851 |
KJ690629 |
Kim et al., 2015 |
aka chicken proventriculitis virus |
|
MeV-C1 |
ch/QIA03/SKR/2004 |
2C(p)-3C(p) |
1703 |
KJ690626 |
Kim et al., 2015 |
aka chicken proventriculitis virus |
|
MeV-C1 |
ch/QIA04/SKR/2005 |
2C(p)-3C(p) |
1448 |
KJ690627 |
Kim et al., 2015 |
aka chicken proventriculitis virus |
|
MeV-C1 |
ch/QIA02/SKR/2006 |
2C(p)-3C(p) |
1381 |
KJ690625 |
Kim et al., 2015 |
aka chicken proventriculitis virus |
|
MeV-C1 |
ch/QIA05/SKR/2012
|
2C(p)-3C(p) |
1418 |
KJ690628 |
Kim et al., 2015 |
aka chicken proventriculitis virus |
|
MeV-C1 |
ch/D62/SKR/2013 |
2A3-2B |
1179 |
KM254175 |
Kim et al., unpub. |
aka chicken megrivirus |
|
MeV-C1 |
ch/D11/SKR/2007 |
2A3-3B |
2935 |
KM254176 |
Kim et al., unpub. |
aka chicken megrivirus |
|
MeV-C1 |
ch/EF84/700/NI/UK |
CG |
9571 |
awaited |
Knowles et al., unpub. |
formerly avian entero-like virus 2 |
|
MeV-C1 |
ch/RS/BR/2015/4 |
3C |
420 |
KY086294 |
Lima et al., unpub. |
aka chicken proventriculitis virus |
|
MeV-C1 |
ch/RS/BR/2015/3 |
? |
215 |
KY086295 |
Lima et al., unpub. |
aka chicken proventriculitis virus |
|
MeV-C1 |
ch/RS/BR/2015/2 |
? |
403 |
KY086296 |
Lima et al., unpub. |
aka chicken proventriculitis virus |
|
MeV-C1 |
ch/RS/BR/2015/1 |
? |
981 |
KY086297 |
Lima et al., unpub. |
aka chicken proventriculitis virus |
|
MeV-C1 |
ch/RS/BR/2015/2 |
? |
835 |
KY086292 |
Lima et al., unpub. |
aka chicken megrivirus |
|
MeV-C1 |
ch/RS/BR/2015/1 |
? |
255 |
KY086293 |
Lima et al., unpub. |
aka chicken megrivirus |
|
MeV-C? |
ch/RS/BR/2015/2S |
? |
1226 |
MG846455 |
Lima et al., 2018 |
|
|
MeV-C? |
ch/RS/BR/2015/1R-3 |
? |
1282 |
MG846456 |
Lima et al., 2018 |
|
|
MeV-C? |
ch/RS/BR/2015/5S-2 |
? |
1468 |
MG846457 |
Lima et al., 2018 |
|
|
MeV-C? |
ch/RS/BR/2015/1R-2 |
? |
1542 |
MG846458 |
Lima et al., 2018 |
|
|
MeV-C? |
ch/RS/BR/2015/5S-1 |
? |
4219 |
MG846459 |
Lima et al., 2018 |
|
|
MeV-C? |
ch/RS/BR/2015/3S-1 |
? |
4536 |
MG846460 |
Lima et al., 2018 |
|
|
MeV-C? |
ch/RS/BR/2015/1R-1 |
? |
4810 |
MG846461 |
Lima et al., 2018 |
|
|
MeV-C? |
ch/RS/BR/2015/3S-2 |
? to 3'UTR |
5059 |
MG846462 |
Lima et al., 2018 |
|
|
MeV-C? |
ch/RS/BR/2015/2R |
CG(p) |
9555 |
MG846463 |
Lima et al., 2018 |
|
|
MeV-C? |
ch/RS/BR/2015/5R |
CG(p) |
9563 |
MG846464 |
Lima et al., 2018 |
|
|
MeV-C? |
ch/RS/BR/2015/3R |
CG(p) |
9577 |
MG846465 |
Lima et al., 2018 |
|
|
MeV-C? |
ch/Karoon/Iran/2017 |
CG(p) |
9570 |
MH125198 |
Ghalyanchi et al., unpub. |
aka chicken megrivirus |
|
|
|
|
|
|
|
|
megrivirus C2 (MeV-C2)
|
|
MeV-C2 |
ch/27C/Hong Kong |
CG |
9591 |
KF979336 |
Lau et al., 2014 |
aka chicken
picornavirus 5 |
|
|
|
|
|
|
|
|
megrivirus C? (MeV-C?)
|
|
MeV-C? |
ch/MG9567/Brazil/2012 |
CG(p) |
9567 |
MH806866 |
Gerber et al., unpub. |
|
|
|
|
|
|
|
|
|
Pacific black duck megrivirus C? (MeV-C?)
|
|
|
pbd/3747nt/PBD08.18-AU-2018 |
P1? |
3747 |
MT247845 |
Vibin et al., 2020 |
Anas superciliosa |
|
|
pbd/455nt/PBD08.18-AU-2018 |
|
455 |
MT247846 |
Vibin et al., 2020 |
Anas superciliosa |
|
|
pbd/876nt/PBD08.18-AU-2018 |
|
876 |
MT247847 |
Vibin et al., 2020 |
Anas superciliosa |
|
|
pbd/1572nt/PBD08.18-AU-2018 |
2B+2C+3A? |
1572 |
MT247848 |
Vibin et al., 2020 |
Anas superciliosa |
|
|
pbd/2821nt/PBD08.18-AU-2018 |
3C+3D |
2821 |
MT247849 |
Vibin et al., 2020 |
Anas superciliosa |
|
|
|
|
|
|
|
|
wood duck megrivirus C? (MeV-C?)
|
|
|
wd/6497nt/WD08.18-AU-2018 |
|
6497 |
MT247850 |
Vibin et al., 2020 |
Chenonetta jubata |
|
|
wd/N9/2933nt/WD08.18-AU-2018 |
|
2933 |
MT247851 |
Vibin et al., 2020 |
Chenonetta jubata |
|
|
wd/N87/2221nt/WD08.18-AU-2018 |
|
2221 |
MT247852 |
Vibin et al., 2020 |
Chenonetta jubata |
|
|
wd/N292/1296nt/WD08.18-AU-2018 |
|
1296 |
MT247853 |
Vibin et al., 2020 |
Chenonetta jubata |
|
|
wd/N12/4874nt/WD08.18-AU-2018 |
|
4874 |
MT247854 |
Vibin et al., 2020 |
Chenonetta jubata |
|
|
wd/N281/622nt/WD08.18-AU-2018 |
|
622 |
MT247855 |
Vibin et al., 2020 |
Chenonetta jubata |
|
|
wd/N281/1071nt/WD08.18-AU-2018 |
|
1071 |
MT247856 |
Vibin et al., 2020 |
Chenonetta jubata |
|
|
|
|
|
|
|
|
chicken megrivirus C? (MeV-C?)
|
|
|
ch/NLD/2019/V_M_013 |
CG(p) |
9590 |
MW054505 |
Kwok et al., unpub. |
|
|
|
ch/NLD/2019/V_M_014 |
CG(p) |
9410 |
MW054506 |
Kwok et al., unpub. |
|
|
|
ch/NLD/2019/V_M_015 |
CG(p) |
9566 |
MW054507 |
Kwok et al., unpub. |
|
|
|
ch/NLD/2019/V_M_016 |
CG(p) |
9592 |
MW054508 |
Kwok et al., unpub. |
|
|
|
ch/NLD/2019/V_M_017 |
CG(p) |
9561 |
MW054509 |
Kwok et al., unpub. |
|
|
|
ch/NLD/2019/V_M_018 |
CG(p) |
8993 |
MW054510 |
Kwok et al.,
unpub. |
|
|
|
ch/NLD/2019/V_M_019 |
CG(p) |
9294 |
MW054511 |
Kwok et al., unpub. |
|
|
|
|
|
|
|
|
|
chicken megrivirus C? (MeV-C?)
|
|
|
env/NLD/2019/VE_5_picorna_7 |
CG(p) |
8801 |
MW684778 |
de Rooij et al., unpub. |
Gallus gallus domesticus |
|
|
env/NLD/2019/VE_6_picorna_40 |
CG(p) |
8846 |
MW684779 |
de Rooij et al., unpub. |
Gallus gallus domesticus |
|
|
env/NLD/2019/VE_7_picorna_5 |
CG(p) |
9414 |
MW684782 |
de Rooij et al., unpub. |
Gallus gallus domesticus |
|
|
env/NLD/2019/VE_8_picorna_45 |
CG(p) |
9580 |
MW684783 |
de Rooij et al., unpub. |
Gallus gallus domesticus |
|
|
ch/NLD/2019/V_M_019_picorna_1 |
CG(p) |
9507 |
MW684791 |
de Rooij et al., unpub. |
Gallus gallus domesticus |
|
|
ch/NLD/2019/V_M_033_picorna_1 |
CG(p) |
9505 |
MW684794 |
de Rooij et al., unpub. |
Gallus gallus domesticus |
|
|
ch/NLD/2019/V_M_034_picorna_4 |
CG(p) |
6408 |
MW684797 |
de Rooij et al., unpub. |
Gallus gallus domesticus |
|
|
ch/NLD/2019/V_M_036_picorna_1 |
CG(p) |
9464 |
MW684798 |
de Rooij et al., unpub. |
Gallus gallus domesticus |
|
|
ch/NLD/2019/V_M_039_picorna_1 |
CG(p) |
9466 |
MW684802 |
de Rooij et al., unpub. |
Gallus gallus domesticus |
|
|
ch/NLD/2019/V_M_040_picorna_1 |
CG(p) |
9666 |
MW684803 |
de Rooij et al., unpub. |
Gallus gallus domesticus |
|
|
ch/NLD/2019/V_M_041_picorna_10 |
CG(p) |
9523 |
MW684805 |
de Rooij et al., unpub. |
Gallus gallus domesticus |
|
|
ch/NLD/2019/V_M_049_picorna_1 |
CG(p) |
9550 |
MW684811 |
de Rooij et al., unpub. |
Gallus gallus domesticus |
|
|
ch/NLD/2019/V_M_050_picorna_1 |
CG(p) |
9517 |
MW684812 |
de Rooij et al., unpub. |
Gallus gallus domesticus |
|
|
ch/NLD/2019/V_M_051_picorna_3 |
CG(p) |
9688 |
MW684814 |
de Rooij et al., unpub. |
Gallus gallus domesticus |
|
|
ch/NLD/2019/V_M_052_picorna_5 |
CG(p) |
9619 |
MW684815 |
de Rooij et al., unpub. |
Gallus gallus domesticus |
|
|
|
|
|
|
|
|
CG = complete genome
(p) = partial gene sequence |
Boros, Á., Pankovics, P., Knowles, N.J., Nemes, C., Delwart, E. and
Reuter, G. (2014). Comparative complete genome analysis of chicken
and turkey megriviruses (family Picornaviridae): long 3’
untranslated regions with a potential second open reading frame and
evidence for possible recombination. J. Virol. 88: 6434-6443.
Farkas, T., Fey, B., Hargitt, E. 3rd., Parcells, M., Ladman, B.,
Murgia, M. and Saif, Y. (2012). Molecular detection of novel
picornaviruses in chickens and turkeys. Virus Genes 44: 262-272.
Kim, H., Yoon, S., Lee, H. and Kwon, Y. (2015). Identification of a
picornavirus from chickens with transmissible viral proventriculitis
using metagenomic analysis. Arch. Virol. 160: 701–709. [Epub ahead of
print 2015 Jan 7]
Kim, H., Choi, J., Lee, H. and Kwon, Y. Viral metagenomic analysis
of the feces of chickens with runting-stunting syndrome.
Unpublished.
Lau, S.K., Woo,
P.C., Yip, C.C., Li, K.S., Fan, R.Y., Bai, R., Huang, Y., Chan, K.H. and
Yuen, K.Y. (2014). Chickens host diverse picornaviruses originated from
potential interspecies transmission with recombination. J. Gen. Virol.
95: 1929-1944.
Lima DA, Cibulski SP, Tochetto C, Varela APM, Finkler F, Teixeira
TF, Loiko MR, Cerva C, Junqueira DM, Mayer FQ, Roehe PM. The
intestinal virome of malabsorption syndrome-affected and unaffected
broilers through shotgun metagenomics. Virus Res. 2018 Dec 10. pii:
S0168-1702(18)30482-9. doi: 10.1016/j.virusres.2018.12.005. [Epub
ahead of print] PubMed PMID: 30543873.
Vibin J, Chamings A, Klaassen M, Bhatta TR, Alexandersen S.
Metagenomic characterisation of avian parvoviruses and
picornaviruses from Australian wild ducks. Sci Rep. 2020 Jul
30;10(1):12800. doi: 10.1038/s41598-020-69557-z. PMID: 32733035;
PMCID: PMC7393117.
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