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Genus: Salivirus
Species: Salivirus A
| Type: salivirus A1 |
|
|
5' UTR |
L |
VP0 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| Type: salivirus A2 |
|
| 5' UTR |
L |
VP0 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
(White areas indicate genes which haven't yet been
sequenced completely;
grey areas are where only partial sequences exist)
| Virus |
Strain |
Region |
Length |
Accession No. |
Reference |
Comments |
Salivirus A1 (SaV-A1) (aka human klassevirus 1)
|
|
SaV-A1 |
hu/NG-J1/Nigeria/2007 |
CG(p) |
7982 |
GQ179640 |
Li et al., 2009 |
5' end missing |
|
SaV-A1 |
hu/NG-F1/Nigeria/2007 |
L(p); P1 to P3;
3' UTR |
6971 |
GQ507022 |
Li et al., 2009 |
5' end missing
& contains gaps |
|
SaV-A1 |
hu/NG-11E/Nigeria/2007 |
3D(p) |
386 |
GQ507008 |
Li et al., 2009 |
|
|
SaV-A1 |
hu/02394-01/USA/2002 |
CG |
7989 |
GQ184145 |
Greninger et al., 2009 |
|
|
SaV-A1 |
hu/Australia/84 |
L(p) to 3' end |
6404 |
GQ253930 |
Holtz et al., 2009 |
|
|
SaV-A1 |
hu/Bar1/Spain/2008 |
2C(p) |
345 |
GQ253931 |
Holtz et al., 2009 |
|
|
3D |
1001 |
GQ253932 |
Holtz et al., 2009 |
|
|
P1(p) |
1025 |
GQ253933 |
Holtz et al., 2009 |
|
|
SaV-A1 |
hu/STL1/USA/2008 |
2C(p) |
345 |
GQ253934 |
Holtz et al., 2009 |
|
|
3D |
1001 |
GQ253935 |
Holtz et al., 2009 |
|
|
P1(p) |
1025 |
GQ253936 |
Holtz et al., 2009 |
|
|
SaV-A1 |
hu/SH1/China/2009 |
CG(p) |
7798 |
GU245894 |
Shan et al., 2010 |
|
|
SaV-A1 |
hu/1/China/2009 |
5' UTR(p) |
414 |
GU376738 |
Shan et al., 2010 |
|
|
SaV-A1 |
hu/2/China/2009 |
5' UTR(p) |
414 |
GU376739 |
Shan et al., 2010 |
|
|
SaV-A1 |
hu/3/China/2009 |
5' UTR(p) |
414 |
GU376740 |
Shan et al., 2010 |
|
|
SaV-A1 |
hu/4/China/2009 |
5' UTR(p) |
414 |
GU376741 |
Shan et al., 2010 |
|
|
SaV-A1 |
hu/5/China/2009 |
5' UTR(p) |
414 |
GU376742 |
Shan et al., 2010 |
|
|
SaV-A1 |
hu/6/China/2009 |
5' UTR(p) |
414 |
GU376743 |
Shan et al., 2010 |
|
|
SaV-A1 |
hu/7/China/2008 |
5' UTR(p) |
414 |
GU376744 |
Shan et al., 2010 |
|
|
SaV-A1 |
hu/8/China/2009 |
5' UTR(p) |
414 |
GU376745 |
Shan et al., 2010 |
|
|
SaV-A1 |
hu/9/China/2009 |
5' UTR(p) |
414 |
GU376746 |
Shan et al., 2010 |
|
|
SaV-A1 |
ch/CH/China/2011 |
CG(p) |
7798 |
JN379039 |
Lan & Hua, unpub. |
from chimpanzee |
|
SaV-A1 |
ch/csh-1/China/2011 |
3D(p) |
369 |
JN379040 |
Lan & Hua, unpub. |
from chimpanzee |
|
SaV-A1 |
ch/csh-2/China/2011 |
3D(p) |
369 |
JN379041 |
Lan & Hua, unpub. |
from chimpanzee |
|
SaV-A1 |
ch/csh-3/China/2011 |
3D(p) |
369 |
JN379042 |
Lan & Hua, unpub. |
from chimpanzee |
|
SaV-A1 |
ch/csh-4/China/2011 |
3D(p) |
369 |
JN379043 |
Lan & Hua, unpub. |
from chimpanzee |
|
SaV-A1 |
ch/csh-5/China/2011 |
3D(p) |
369 |
JN379044 |
Lan & Hua, unpub. |
from chimpanzee |
|
SaV-A1 |
hu/BR2396/BRA/2003 |
VP1 |
833 |
KM272941 |
Santos et al., 2015 |
|
|
SaV-A1 |
hu/BN-1/GER/2012 |
VP1 |
828 |
KP247442 |
Aldabbagh et al., 2015 |
|
|
SaV-A1 |
hu/BN-2/GER/2013 |
CG(p) |
7990 |
KP247439 |
Aldabbagh et al., 2015 |
|
|
SaV-A1 |
hu/BN-3/GER/2013 |
VP1 |
828 |
KP247441 |
Aldabbagh et al., 2015 |
|
|
SaV-A1 |
hu/BN-4/GER/2013 |
VP1 |
828 |
KP247443 |
Aldabbagh et al., 2015 |
|
|
SaV-A1 |
hu/SZ1/CHA/2013 |
CG(p) |
7633 |
KT182636 |
Pei, unpub. |
|
|
SaV-A1 |
hu/GUT/2009/A-1746 |
CG(p) |
7952 |
KT310068 |
Ng et al., 2016 |
|
|
SaV-A1 |
hu/Baja-5332/2013/HUN |
CG |
8021 |
KT240115 |
Boros et al., 2016 |
|
|
SaV-A1 |
hu/Baja-5332/2013/HUN |
VP3(p) to 2A(p) |
930 |
KT240116 |
Boros et al., 2016 |
|
|
SaV-A1 |
hu/Baja-5334/2013/HUN |
VP3(p) to 2A(p) |
930 |
KT240117 |
Boros et al., 2016 |
|
|
SaV-A1? |
hu/YZ01/China/2018 |
CG(p) |
7847 |
MK801665 |
Cui et al., unpub. |
|
|
SaV-A1? |
hu/YZ02/China/2018 |
CG(p) |
7846 |
MK801666 |
Cui et al., unpub. |
|
|
SaV-A1? |
hu/YZ03/China/2018 |
CG(p) |
7852 |
MK801667 |
Cui et al., unpub. |
|
|
SaV-A1 |
hu/FUAN-01/China/2018 |
CG(p) |
7907 |
MW175418 |
He et al., unpub. |
|
|
|
|
|
|
|
|
|
Salivirus A2 (SaV-A2)(candidate)
|
|
SaV-A2 |
SewBKK/Thailand/2009 |
CG(p) |
6396 |
JQ898343 |
Ng et al., 2012 |
from sewage |
|
SaV-A2 |
hu/FHB/China/2011 |
CG(p) |
7998 |
KM023140 |
Yu et al.,
2015 |
5' end missing |
|
SaV-A2 |
hu/BN-5/GER/2013 |
CG |
7998 |
KP247440 |
Aldabbagh et al., 2015 |
|
|
SaV-A2? |
hu/V5C/Venezuela/2015 |
? |
4428 |
MG571815 |
Siqueira et al., unpub. |
|
|
SaV-A2? |
hu/V18C/Venezuela/2015 |
? |
4428 |
MG571816 |
Siqueira et al., unpub. |
|
|
|
|
|
|
|
|
|
CG = complete genome
(p) = partial gene sequence |
Aldabbagh, S., Eckerle, I., Müller, A., Delwart, E.L. and
Eis-Hübinger, A.M. (2015). Salivirus type 1 and type 2 in patients
with acute gastroenteritis, Germany. J. Clin. Virol. 72: 16-19.
Boros, Á., Raáb, M., Károly, É., Karai, A., Kátai, A., Bolba, N.,
Pankovics, P. and Reuter, G. (2016). A cluster of salivirus A1 (Picornaviridae)
infections in newborn babies with acute gastroenteritis in a
neonatal hospital unit in Hungary. Arch. Virol. 2016 Mar 21 [Epub
ahead of print].
Greninger, A.L., Runckel, C., Chiu, C.Y., Haggerty, T., Parsonnet,
J., Ganem, D. and DeRisi, J.L. (2009). The complete genome of
klassevirus - a novel picornavirus in pediatric stool. Virology
Journal 6: 82 doi:10.1186/1743-422X-6-82.
Holtz, L.R., Finkbeiner, S.R., Zhao, G., Kirkwood, C.D., Girones,
R., Pipas, J.M. and Wang, D. (2009). Klassevirus 1, a previously
undescribed member of the family Picornaviridae, is
globally widespread. Virology Journal 2009, 6: 86
doi:10.1186/1743-422X-6-86.
Li, L., Victoria, J., Kapoor, A., Blinkova, O., Wang, C., Babrzadeh,
F., Mason, C.J., Pandey, P., Triki, H., Bahri, O., Oderinde, B.S.,
Baba, M.M., Bukbuk, D.N., Besser, J.M., Bartkus, J.M. and Delwart,
E.L. (2009). A novel picornavirus associated with gastroenteritis. J
Virol. 83: 12002-12006. Epub 2009 Sep 16.
doi:10.1128/JVI.01241-09.
Ng, T.F.F., Marine, R., Wang, C., Simmonds, P., Kapusinszky, B.,
Bodhidatta, L., Oderinde, B.S., Wommack, K.E. and Delwart, E.
(2012). High variety of known and new RNA and DNA viruses of diverse
origins in untreated sewage. J. Virol. 86: 12161-12175.
Ng, T.F.F., Magańa, L., Montmayeur, A., Lopez, M.R., Gregoricus, N.,
Oberste, M.S., Vinjé, J. and Nix, W.A. Characterization of a
salivirus (Picornaviridae) from a diarrheal child in
Guatemala. Genome Announc. 4(1). pii: e01751-15.
Santos, N., Mendes, G.S., Silva, R.C., Pena, G.A., Rojas, M., Amorim,
A.R. and Lima, D.P. (2015). Salivirus and aichivirus A infections in
children with gastroenteritis in Brazil. Clin. Microbiol. Infect.
21(8):799.e1-3.
Shan, T., Wang, C., Cui, L., Yu, Y., Delwart, E., Zhao, W., Zhu, C.,
Lan, D., Dai, X. and Hua, X. (2010). Picornavirus
salivirus/klassevirus in children with diarrhea, China. Emerg.
Infect. Dis. 16: 1303-1305.
Yu, J.M., Ao, Y.Y., Liu, N., Li, L.L. and Duan, Z.J. (2015).
Salivirus in children and its association with childhood acute
gastroenteritis: a paired case-control study. PLoS One 10(7):
e0130977.
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