|
Child level |
|
|
|
Same level |
 |
|
|
Genus: Pasivirus
Species: Pasivirus A
|
Type:
pasivirus
A1
(PaV-A1) |
|
| 5' UTR |
VP0 |
VP3 |
VP1 |
2A1 |
2A2 |
2B |
2C |
3A |
3B1 |
3B2 |
3C |
3D |
3' UTR |
|
|
Type:
pasivirus
A2
(PaV-A2) |
|
| 5' UTR |
VP0 |
VP3 |
VP1 |
2A1 |
2A2 |
2B |
2C |
3A |
3B1 |
3B2 |
3C |
3D |
3' UTR |
|
|
Type:
pasivirus
A3
(PaV-A3) |
|
| 5' UTR |
VP0 |
VP3 |
VP1 |
2A1 |
2A2 |
2B |
2C |
3A |
3B1 |
3B2 |
3C |
3D |
3' UTR |
|
|
Type:
pasivirus
A4
(PaV-A4) |
|
| 5' UTR |
VP0 |
VP3 |
VP1 |
2A1 |
2A2 |
2B |
2C |
3A |
3B1 |
3B2 |
3C |
3D |
3' UTR |
|
(White areas indicate genes which
haven't yet been sequenced
completely; grey areas are where
only partial sequences exist)
|
| |
| Virus |
Strain |
Region |
Length |
Accession
no. |
Reference |
Comments |
Pasivirus A1 (PaV-A1)
|
|
PaV-A1
|
swine/France/2011
|
CG(p)
|
6916
|
JQ316470
|
Sauvage et al.,
2012
|
|
|
PaV-A1 |
sw/GER/L00721/2014 |
CG(p) |
6917 |
LT898442 |
Pohlmann, unpub. |
|
|
|
|
|
|
|
|
|
Pasivirus A2 (PaV-A2)
|
|
PaV-A2
|
swine/China/2010
|
CG(p)
|
6858
|
JX491648
|
Yu et al., 2013b |
|
|
|
|
|
|
|
|
|
Pasivirus A3 (PaV-A3)
|
|
PaV-A3 |
swine/Zsana1/2013/HUN |
CG |
6938 |
KM259923 |
Boros et al., 2015 |
|
|
PaV-A3 |
sw/GER/L00799-K11_14-01/2014 |
CG(p) |
6924 |
LT898429 |
Pohlmann, unpub. |
|
|
|
|
|
|
|
|
|
Pasivirus A4? (PaV-A4)
|
|
PaV-A4? |
sw/GER/L01061-K07_15-03/2015 |
CG(p) |
6905 |
LT898422 |
Pohlmann, unpub. |
|
|
PaV-A4? |
sw/US/17-50816IA60467-1/2001 |
CG(p) |
6695 |
MG674090 |
Guo et al., 2018 |
|
|
|
|
|
|
|
|
|
Pasivirus A? (PaV-A?)
|
|
PaV-A?
|
swine/1st_LV-513
|
2C(p)
|
317
|
JX560993
|
Yu et al., 2013a
|
|
|
PaV-A?
|
swine/1st_LV-516
|
2C(p)
|
317 |
JX560994
|
Yu et al., 2013a
|
|
|
PaV-A?
|
swine/1st_LV-519
|
2C(p)
|
317 |
JX560995
|
Yu et al., 2013a |
|
|
PaV-A?
|
swine/1st_LV-533
|
2C(p)
|
317 |
JX560996
|
Yu et al., 2013a |
|
|
PaV-A?
|
swine/1st_LV-562
|
2C(p)
|
317 |
JX560997
|
Yu et al., 2013a |
|
|
PaV-A?
|
swine/1st_LV-566
|
2C(p)
|
317 |
JX560998
|
Yu et al., 2013a |
|
|
PaV-A?
|
swine/1st_LV-568
|
2C(p)
|
317 |
JX560999
|
Yu et al., 2013a |
|
|
PaV-A?
|
swine/1st_LV-581
|
2C(p)
|
317 |
JX561000
|
Yu et al., 2013a |
|
|
PaV-A?
|
swine/1st_LV-584
|
2C(p)
|
317 |
JX561001
|
Yu et al., 2013a |
|
|
PaV-A?
|
swine/1st_LV-586
|
2C(p)
|
317 |
JX561002
|
Yu et al., 2013a |
|
|
PaV-A?
|
swine/1st_LV-587
|
2C(p)
|
317 |
JX561003
|
Yu et al., 2013a |
|
|
PaV-A?
|
swine/1st_LV-591
|
2C(p)
|
317 |
JX561004
|
Yu et al., 2013a |
|
|
PaV-A?
|
swine/1st_LV-597
|
2C(p)
|
317 |
JX561005
|
Yu et al., 2013a |
|
|
PaV-A?
|
swine/1st_LV-627
|
2C(p)
|
317 |
JX561006
|
Yu et al., 2013a |
|
|
PaV-A?
|
swine/1st_LV-630
|
2C(p)
|
317 |
JX561007
|
Yu et al., 2013a |
|
|
PaV-A?
|
swine/1st_LV-631
|
2C(p)
|
317 |
JX561008
|
Yu et al., 2013a |
|
|
PaV-A?
|
swine/1st_LV-634
|
2C(p)
|
317 |
JX561009
|
Yu et al., 2013a |
|
|
PaV-A?
|
swine/1st_LV-638
|
2C(p)
|
317 |
JX561010
|
Yu et al., 2013a |
|
|
PaV-A?
|
swine/1st_LV-641
|
2C(p)
|
317 |
JX561011
|
Yu et al., 2013a |
|
|
PaV-A?
|
swine/1st_LV-649
|
2C(p)
|
317 |
JX561012
|
Yu et al., 2013a |
|
|
PaV-A?
|
swine/1st_LV-654
|
2C(p)
|
317 |
JX561013
|
Yu et al., 2013a |
|
|
PaV-A?
|
swine/1st_LV-655
|
2C(p)
|
317 |
JX561014
|
Yu et al., 2013a |
|
|
PaV-A?
|
swine/1st_LV-680
|
2C(p)
|
317 |
JX561015
|
Yu et al., 2013a |
|
|
PaV-A?
|
swine/1st_LV-681
|
2C(p)
|
317 |
JX561016
|
Yu et al., 2013a |
|
|
PaV-A?
|
swine/1st_LV-683
|
2C(p)
|
317 |
JX561017
|
Yu et al., 2013a |
|
|
PaV-A?
|
swine/1st_LV-700
|
2C(p)
|
317 |
JX561018
|
Yu et al., 2013a |
|
|
PaV-A?
|
swine/1st_LV-703
|
2C(p)
|
317 |
JX561019
|
Yu et al., 2013a |
|
|
PaV-A?
|
swine/1st_LV-709
|
2C(p)
|
317 |
JX561020
|
Yu et al., 2013a |
|
|
PaV-A?
|
swine/1st_LV-721
|
2C(p)
|
315 |
JX561021
|
Yu et al., 2013a |
|
|
PaV-A?
|
swine/1st_LV-725
|
2C(p)
|
317 |
JX561022
|
Yu et al., 2013a |
|
|
PaV-A?
|
swine/1st_LV-740
|
2C(p)
|
317 |
JX561023
|
Yu et al., 2013a |
|
|
PaV-A?
|
swine/1st_LV-760
|
2C(p)
|
317 |
JX561024
|
Yu et al., 2013a |
|
|
PaV-A?
|
swine/1st_LV-763
|
2C(p)
|
316 |
JX561025
|
Yu et al., 2013a |
|
|
PaV-A?
|
swine/1st_LV-764
|
2C(p)
|
317 |
JX561026
|
Yu et al., 2013a |
|
|
PaV-A?
|
swine/1st_LV-792
|
2C(p)
|
317 |
JX561027
|
Yu et al., 2013a |
|
|
PaV-A?
|
swine/2nd_LV-568
|
2C(p)
|
286 |
JX561028
|
Yu et al., 2013a |
|
|
PaV-A?
|
swine/2nd_LV-655
|
2C(p)
|
284 |
JX561029
|
Yu et al., 2013a |
|
|
PaV-A?
|
swine/2nd_LV-658
|
2C(p)
|
286 |
JX561030
|
Yu et al., 2013a |
|
|
PaV-A?
|
swine/2nd_LV-684
|
2C(p)
|
284 |
JX561031
|
Yu et al., 2013a |
|
|
PaV-A?
|
swine/2nd_LV-698
|
2C(p)
|
286 |
JX561032
|
Yu et al., 2013a |
|
|
PaV-A?
|
swine/2nd_LV-700
|
2C(p)
|
286 |
JX561033
|
Yu et al., 2013a |
|
|
PaV-A?
|
swine/2nd_LV-703
|
2C(p)
|
286 |
JX561034
|
Yu et al., 2013a |
|
|
PaV-A?
|
swine/2nd_LV-735
|
2C(p)
|
286 |
JX561035
|
Yu et al., 2013a |
|
|
PaV-A? |
swine/21/China/2010 |
3C(p)/3D(p) |
334 |
KC138856 |
Yu et al., 2013b |
|
|
PaV-A? |
swine/30/China/2010 |
3C(p)/3D(p) |
334 |
KC138857 |
Yu et al., 2013b |
|
|
PaV-A? |
swine/33/China/2010 |
3C(p)/3D(p) |
334 |
KC138858 |
Yu et al., 2013b |
|
|
PaV-A? |
swine/34/China/2010 |
3C(p)/3D(p) |
334 |
KC138859 |
Yu et al., 2013b |
|
|
PaV-A? |
swine/35/China/2010 |
3C(p)/3D(p) |
334 |
KC138860 |
Yu et al., 2013b |
|
|
PaV-A? |
swine/58/China/2010 |
3C(p)/3D(p) |
334 |
KC138861 |
Yu et al., 2013b |
|
|
PaV-A? |
swine/59/China/2010 |
3C(p)/3D(p) |
334 |
KC138862 |
Yu et al., 2013b |
|
|
PaV-A? |
swine/61/China/2010 |
3C(p)/3D(p) |
334 |
KC138863 |
Yu et al., 2013b |
|
|
PaV-A? |
swine/62/China/2010 |
3C(p)/3D(p) |
334 |
KC138864 |
Yu et al., 2013b |
|
|
PaV-A? |
swine/64/China/2010 |
3C(p)/3D(p) |
334 |
KC138865 |
Yu et al., 2013b |
|
|
PaV-A? |
swine/66/China/2010 |
3C(p)/3D(p) |
334 |
KC138866 |
Yu et al., 2013b |
|
|
PaV-A? |
swine/68/China/2010 |
3C(p)/3D(p) |
334 |
KC138867 |
Yu et al., 2013b |
|
|
PaV-A? |
swine/147/China/2010 |
3C(p)/3D(p) |
334 |
KC138868 |
Yu et al., 2013b |
|
|
PaV-A? |
swine/218/China/2010 |
3C(p)/3D(p) |
334 |
KC138869 |
Yu et al., 2013b |
|
|
PaV-A? |
swine/228/China/2010 |
3C(p)/3D(p) |
334 |
KC138870 |
Yu et al., 2013b |
|
|
PaV-A? |
swine/230/China/2010 |
3C(p)/3D(p) |
334 |
KC138871 |
Yu et al., 2013b |
|
|
PaV-A? |
swine/233/China/2010 |
3C(p)/3D(p) |
334 |
KC138872 |
Yu et al., 2013b |
|
|
PaV-A? |
swine/236/China/2010 |
3C(p)/3D(p) |
334 |
KC138873 |
Yu et al., 2013b |
|
|
PaV-A? |
swine/280/China/2010 |
3C(p)/3D(p) |
334 |
KC138874 |
Yu et al., 2013b |
|
|
PaV-A? |
swine/330/China/2010 |
3C(p)/3D(p) |
334 |
KC138875 |
Yu et al., 2013b |
|
|
PaV-A? |
swine/281/China/2010 |
3C(p)/3D(p) |
334 |
KC138876 |
Yu et al., 2013b |
|
|
PaV-A? |
swine/282/China/2010 |
3C(p)/3D(p) |
334 |
KC138877 |
Yu et al., 2013b |
|
|
PaV-A? |
swine/283/China/2010 |
3C(p)/3D(p) |
334 |
KC138878 |
Yu et al., 2013b |
|
|
PaV-A? |
swine/284/China/2010 |
3C(p)/3D(p) |
334 |
KC138879 |
Yu et al., 2013b |
|
|
PaV-A? |
swine/297/China/2010 |
3C(p)/3D(p) |
334 |
KC138880 |
Yu et al., 2013b |
|
|
PaV-A? |
swine/298/China/2010 |
3C(p)/3D(p) |
334 |
KC138881 |
Yu et al., 2013b |
|
|
PaV-A? |
swine/299/China/2010 |
3C(p)/3D(p) |
334 |
KC138882 |
Yu et al., 2013b |
|
|
PaV-A? |
swine/325/China/2010 |
3C(p)/3D(p) |
334 |
KC138883 |
Yu et al., 2013b |
|
|
PaV-A? |
swine/349/China/2010 |
3C(p)/3D(p) |
334 |
KC138884 |
Yu et al., 2013b |
|
|
PaV-A? |
swine/353/China/2010 |
3C(p)/3D(p) |
334 |
KC138885 |
Yu et al., 2013b |
|
|
PaV-A? |
swine/354/China/2010 |
3C(p)/3D(p) |
334 |
KC138886 |
Yu et al., 2013b |
|
|
PaV-A? |
swine/355/China/2010 |
3C(p)/3D(p) |
334 |
KC138887 |
Yu et al., 2013b |
|
|
PaV-A? |
swine/226/China/2010 |
3C(p)/3D(p) |
334 |
KC138888 |
Yu et al., 2013b |
|
|
PaV-A? |
swine/279/China/2010 |
3C(p)/3D(p) |
334 |
KC138889 |
Yu et al., 2013b |
|
|
PaV-A? |
swine/281/China/2010 |
3C(p)/3D(p) |
334 |
KC138890 |
Yu et al., 2013b |
|
|
PaV-A? |
swine/325/China/2010 |
3C(p)/3D(p) |
334 |
KC138891 |
Yu et al., 2013b |
|
|
PaV-A? |
swine/Rom1/Romania/2013 |
5'UTR(p)-VP0(p) |
531 |
KJ780020 |
Zaulet et al., unpub. |
|
|
PaV-A? |
swine/Rom2/Romania/2013 |
5'UTR(p)-VP0(p) |
531 |
KJ780021 |
Zaulet et al., unpub. |
|
|
PaV-A? |
swine/Rom3/Romania/2013 |
5'UTR(p)-VP0(p) |
422 |
KJ780022 |
Zaulet et al., unpub. |
|
|
PaV-A? |
swine/Rom4/Romania/2013 |
VP1(p)-2A2(p) |
403 |
KJ780023 |
Zaulet et al., unpub. |
|
|
PaV-A? |
swine/Rom5/Romania/2013 |
3A(p)-3C(p) |
619 |
KJ780024 |
Zaulet et al., unpub. |
|
|
|
|
|
|
|
|
|
CG = complete genome
(p) = partial gene sequence
|
|
| |
References
Boros, Á., Fenyvesi, H., Pankovics, P., Biró,
H., Phan, T.G., Delwart, E. and Reuter, G. (2015). Secondary
structure analysis of swine pasivirus (family Picornaviridae)
RNA reveals a type-IV IRES and a parechovirus-like 3' UTR
organization. Arch. Virol. 160: 1363-1366.
Guo, B., Kim, H., Zheng, Y., Shen, H., Pogranichniy, R.M., Schwartz,
K.J., Li, G. and Yoon, K.-J. (2018). Genomic sequence of a swine
pasivirus type 1 strain identified in U.S. swine. Genome Announc 6:
e01569-17.
Sauvage, V., Ar Gouilh, M., Cheval, J., Muth, E., Pariente, K.,
Burguiere, A., Caro, V., Manuguerra, J.C. and Eloit, M. (2012). A
member of a new Picornaviridae genus is shed in pig feces. J. Virol.
86: 10036-10046. Epub 2012 Jul 11.
Yu, J.M., Li, J.S., Ao, Y.Y. and Duan, Z.J.
(2013a). Detection of novel viruses in porcine fecal samples from
China. Virol J. 10(1): 39 [Epub 2013 Jan 30].
Yu, J.M., Li, X.Y., Ao, Y.Y., Li, L.L., Liu, N., Li, J.S. and Duan,
Z.J. (2013b). Identification of a novel picornavirus in healthy
piglets and seroepidemiological evidence of its presence in humans.
PLoS One. 8(8):e70137.
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