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Picornaviruses of fish, amphibian & reptiles
Rodent picornaviruses
  New picornaviruses of fish, amphibians and reptiles:

Shi M, Lin XD, Chen X, Tian JH, Chen LJ, Li K, Wang W, Eden JS, Shen JJ, Liu L, Holmes EC, Zhang YZ. The evolutionary history of vertebrate RNA viruses. Nature. 2018 Apr 4. doi: 10.1038/s41586-018-0012-7. [Epub ahead of print] PubMed PMID: 29618816.

Table data was extracted from the above paper.
SG Species Virus Name Strain Accession Length Tissue Host class Host order Host species Blastx hits on known viruses (blast amino acid identity)
1   Hainan black-spectacled toad picornavirus HKCCC24180 MG600086 7350 Gut Amphibia Anura Duttaphrynus melanostictus Tortoise picornavirus (37%)
1   Zhejiang banded bullfrog picornavirus LPWG5926 MG600087 7224 Liver Amphibia Anura Kaloula pulchra Rat theilovirus 1 (31%)
2 Pemapivirus B Chinese broad-headed pond turtle picornavirus 1 WHWGC151314 MG600108 9218 Gut Reptilia Testudines Mauremys megalocephala Rosavirus C (42%)
2 Pemapivirus A Chinese softshell turtle picornavirus 1 WHJYGF74978 MG600106 9196 Liver Reptilia Testudines Pelodiscus sinensis Rosavirus B (41%)
2   Guangdong chinese water skink picornavirus ZGLXR119682 MG600091 8049 Gut, Lung, Liver Reptilia Squamata Tropidophorus sinicus Porcine kobuvirus (29%)
2   Guangdong chinese water snake picornavirus LPSF20501 MG600081 7994 Lung, Liver Reptilia Squamata Myrrophis chinensis Rosavirus C (40%)
2 Rafivirus B Hainan gekko similignum picornavirus LPXYC222841 MG600090 7401 Gut Reptilia Squamata Gekko similignum Tortoise rafivirus A (54%)
2   Hainan oriental leaf-toed gecko picornavirus LPXYC213122 MG600089 7969 Gut, Lung, Liver Reptilia Squamata Hemidactylus bowringii Livupivirus A (28%)
2 Rafivirus A Tortoise Rafivirus A WHWGGF74766 MG600109 7315 Liver, Lung, Gut Reptilia Testudines Mauremys sinensis Tortoise rafivirus A (99%)
2 Rajidapivirus A Wenling sharpspine skate picornavirus DHBYCGS18742 MG600093 7948 Gut Chondrichthyes Rajiformes Okamejei acutispina Bat picornavirus (28%)
2   Wenling triplecross lizardfish picornavirus XYHYC185246 MG600076 8591 Gut Actinopterygii Aulopiformes Synodus macrops Chicken sicinivirus JSY (31%)
2   Yili teratoscincus roborowskii picornavirus 1 LPWC175499 MG600083 8343 Gut Reptilia Squamata Teratoscincus roborowskii Livupivirus A (30%)
3   Guangxi changeable lizard picornavirus 2 GXSXC128559 MG600105 7115 Gut Reptilia Squamata Calotes versicolor Avian sapelovirus (43%)
4   Beihai conger picornavirus BHFishC188617 MG600065 7532 Gut Actinopterygii Anguilliformes Conger japonicus Eel picornavirus 1 (42%)
4   Beihai pentapodus picornavirus LXMC175911 MG600071 4393 Gut Actinopterygii Perciformes Pentapodus sp Eel picornavirus 1 (40%)
4 Limnipivirus D Guangdong spotted longbarbel catfish picornavirus GDDSYC43605 MG600094 7504 Gut Actinopterygii Siluriformes Hemibagrus guttatus Bluegill picornavirus (37%)
4 Limnipivirus B Wenling bighead beaked sandfish picornavirus XQTMC45688 MG600092 7822 Gut Actinopterygii Gonorynchiformes Gonorynchus abbreviatus Fathead minnow picornavirus (51%)
4   Wenling brown-lined puffer picornavirus XTXMC52140 MG600100 7523 Gut Actinopterygii Tetraodontiformes Canthigaster rivulata Eel picornavirus 1 (36%)
4   Wenling fish picornavirus 1 XYHYC180303 MG600078 7480 Gut Actinopterygii Lophiiformes, Ateleopodiformes, Perciformes Various species Eel picornavirus 1 (34%)
4   Wenling hoplichthys picornavirus XYXMC41402 MG600101 7386 Gut Actinopterygii Scorpaeniformes Hoplichthys sp Eel picornavirus 1 (39%)
4   Wenling lepidotrigla picornavirus YXMC111438 MG600079 7518 Gut Actinopterygii Scorpaeniformes Lepidotrigla sp Eel picornavirus 1 (41%)
4   Wenling pleuronectiformes picornavirus XDXMG712 MG600098 3213 Liver Actinopterygii Pleuronectiformes N/A Eel picornavirus 1 (46%)
4   Wenling rattails picornavirus XYHYC192101 MG600077 8075 Gut, Liver Actinopterygii Gadiformes Coelorinchus multispinulosus Eel picornavirus 1 (40%)
4   Wenling scaldfish picornavirus 1 XDXMC49056 MG600096 7748 Gut Actinopterygii Pleuronectiformes Arnoglossus sp Eel picornavirus 1 (36%)
4   Wenling scaldfish picornavirus 2 XDXMC61459 MG600097 7758 Gut Actinopterygii Pleuronectiformes Arnoglossus sp Eel picornavirus 1 (35%)
4 new genus Wenling thamnaconus septentrionalis picornavirus LQMMT1208 MG600080 7152 Gill Actinopterygii Tetraodontiformes Thamnaconus septentrionalis Human parechovirus 17 (27%)
4 Limnipivirus E Western African lungfish picornavirus FZFYF120546 MG600102 7332 Lung, Gut Sarcopterygii Lepidosireniformes Protopterus annectens Sebokele virus 1 (26%)
4   Wuhan carp picornavirus DSYC18088 MG600066 7781 Gut Actinopterygii Cypriniformes Carassius auratus Eel picornavirus 1 (41%)
4   Wuhan sharpbelly picornavirus 1 DSYC20078 MG600067 7220 Gut Actinopterygii Cypriniformes Hemiculter leucisculus Eel picornavirus 1 (32%)
4   Yancheng osbecks grenadier anchovy picornavirus XFXMC15460 MG600099 7702 Gut Actinopterygii Clupeiformes Coilia mystus Eel picornavirus 1 (33%)
4 Parechovirus F Yili teratoscincus roborowskii picornavirus 2 LPWC210215 MG600084 7471 Gut Reptilia Squamata Teratoscincus roborowskii Ljungan virus (42%)
5 Fipivirus D Beihai wrasse picornavirus LXMC183013 MG600073 5055 Gut Actinopterygii Perciformes Hologymnosus sp Rodent hepatovirus (29%)
5 Tremovirus B Chinese broad-headed pond turtle picornavirus 2 WHWGGF75534 MG600110 7999 Liver Reptilia Testudines Mauremys megalocephala Tremovirus A (35%)
5 Tremovirus B Chinese softshell turtle picornavirus 2 WHJYGF75857 MG600107 8117 Liver Reptilia Testudines Pelodiscus sinensis Tremovirus A (52%)
5 Caecilivirus A Guangdong fish caecilians picornavirus GDYYC83005 MG600103 8318 Gut Amphibia Gymnophiona Ichthyophis bannanicus Tremovirus A (33%)
5 Fipivirus E Wenling banjofish picornavirus 1 LXMC34076 MG600070 8173 Gut Actinopterygii Perciformes Banjos banjos Hepatovirus A (34%)
5 Fipivirus E Wenling banjofish picornavirus 2 LXMC178843 MG600072 5318 Gut Actinopterygii Perciformes Banjos banjos Hepatovirus A (28%)
5 Fipivirus F Wenling chelidoperca picornavirus LXMC188591 MG600074 8332 Gut Actinopterygii Perciformes Chelidoperca sp Human hepatitis A virus (32%)
5 Fipivirus C Wenling crossorhombus picornavirus XDXMC21480 MG600095 7790 Gut Actinopterygii Pleuronectiformes Crossorhombus sp Phopivirus (28%)
5 Fipivirus D Wenling jack mackerels picornavirus LXMC375591 MG600075 8084 Gut Actinopterygii Perciformes Trachurus sp Rodent hepatovirus (30%)
5 Fipivirus A Wuhan sharpbelly picornavirus 2 DSYC36136 MG600068 7965 Gut Actinopterygii Cypriniformes Hemiculter leucisculus Avian encephalomyelitis virus (31%)
5 Fipivirus B Wuhan sharpbelly picornavirus 3 DSYC47507 MG600069 7871 Gut Actinopterygii Cypriniformes Hemiculter leucisculus Hepatovirus A (26%)
6   Fujian spotted paddle-tail newt picornavirus BHNC6391 MG600085 9816 Gut, Liver Amphibia Caudata Pachytriton brevipes Bat picornavirus (29%)
6   Guangdong red-banded snake picornavirus LPSG10844 MG600082 7371 Liver Reptilia Squamata Dinodon rufozonatum Falcovirus A1 (47%)
6   Guangxi changeable lizard picornavirus 1 GXSXC128972 MG600104 8758 Gut, Lung, Liver Reptilia Squamata Calotes versicolor Rodent hepatovirus (24%)
6   Guangxi chinese leopard gecko picornavirus LPXYC178088 MG600088 8404 Gut Reptilia Squamata Goniurosaurus luii Falcovirus A1 (28%)

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