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Picornaviruses of fish, amphibian & reptiles
Rodent picornaviruses
Zebrafish picornavirus 1
 
A number of unassigned rodent picornavirus genomes have been deposited on GenBank (Wu et al., 2018), They await further analysis, but my preliminary findings (using polymerase sequences in BLAST) are as follows:


Virus Strain Region Length Accession no. Host Reference

Hunnivirus-like

  RtRrs-PicoV/YN2014 CG 7579 KY432925 Rattus andamanensis  Wu et al., 2018
  RtNn-PicoV/SX2016 CG(p) 6475 KY432939 Niviventer niviventer Wu et al., 2018
             

Parechovirus B (Ljungan virus)

  RtMrut-PicoV/JL2014-2 CG 7631 KY432929 Myodes rutilus Wu et al., 2018
             

Kobuvirus - Aichivirus A-like

  RtMruf-PicoV/JL2014-2 CG 8184 KY432931 Myodes rufocanus Wu et al., 2018
             

Rabovirus A-like

  RtRn-PicoV/GD2015 CG 7850 KY432936 Rattus norvegicus Wu et al., 2018
  RtNn-PicoV/SAX2016 3A(p)-3'UTR 2198 KY432937 Rattus norvegicus Wu et al., 2018
             

Mosavirus-like 

  RtAs-PicoV/XJ2016 3C(p)-3'UTR 1632 KY432938 Allactaga sibirica Wu et al., 2018
             

Mischivirus-like 

  SoreX-PicoV/ZJ2016 3C(p)-3D(p) 883 KY432941 Sorex sp.? Wu et al., 2018
             

References

Wu Z, Lu L, Du J, Yang L, Ren X, Liu B, Jiang J, Yang J, Dong J, Sun L, Zhu Y, Li Y, Zheng D, Zhang C, Su H, Zheng Y, Zhou H, Zhu G, Li H, Chmura A, Yang F, Daszak P, Wang J, Liu Q, Jin Q. Comparative analysis of rodent and small mammal viromes to better understand the wildlife origin of emerging infectious diseases. Microbiome. 2018 Oct 3;6(1):178. doi: 10.1186/s40168-018-0554-9. PubMed PMID: 30285857; PubMed Central PMCID: PMC6171170.

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