Cosavirus A seqs

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Unassigned
  Genus: Cosavirus

Species: Cosavirus A

  Type: human cosavirus A1
5' UTR VP4 VP2 VP3 VP1 2A1 2A2 2B 2C 3A 3B 3C 3D 3' UTR
  Type: human cosavirus A2
5' UTR VP4 VP2 VP3 VP1 2A1 2A2 2B 2C 3A 3B 3C 3D 3' UTR
  Type: human cosavirus A3
5' UTR VP4 VP2 VP3 VP1 2A1 2A2 2B 2C 3A 3B 3C 3D 3' UTR
  Type: human cosavirus A4
5' UTR VP4 VP2 VP3 VP1 2A1 2A2 2B 2C 3A 3B 3C 3D 3' UTR
  Type: human cosavirus A5
5' UTR VP4 VP2 VP3 VP1 2A1 2A2 2B 2C 3A 3B 3C 3D 3' UTR
  Type: human cosavirus A6
5' UTR VP4 VP2 VP3 VP1 2A1 2A2 2B 2C 3A 3B 3C 3D 3' UTR
  Type: human cosavirus A7
5' UTR VP4 VP2 VP3 VP1 2A1 2A2 2B 2C 3A 3B 3C 3D 3' UTR
  Type: human cosavirus A8
5' UTR VP4 VP2 VP3 VP1 2A1 2A2 2B 2C 3A 3B 3C 3D 3' UTR
  Type: human cosavirus A9
5' UTR VP4 VP2 VP3 VP1 2A1 2A2 2B 2C 3A 3B 3C 3D 3' UTR
  Type: human cosavirus A10
5' UTR VP4 VP2 VP3 VP1 2A1 2A2 2B 2C 3A 3B 3C 3D 3' UTR
  Type: human cosavirus A11
5' UTR VP4 VP2 VP3 VP1 2A1 2A2 2B 2C 3A 3B 3C 3D 3' UTR
  Type: human cosavirus A12
5' UTR VP4 VP2 VP3 VP1 2A1 2A2 2B 2C 3A 3B 3C 3D 3' UTR
  Type: human cosavirus A13
5' UTR VP4 VP2 VP3 VP1 2A1 2A2 2B 2C 3A 3B 3C 3D 3' UTR
  Type: human cosavirus A14
5' UTR VP4 VP2 VP3 VP1 2A1 2A2 2B 2C 3A 3B 3C 3D 3' UTR
  Type: human cosavirus A15
5' UTR VP4 VP2 VP3 VP1 2A1 2A2 2B 2C 3A 3B 3C 3D 3' UTR
  Type: human cosavirus A16
5' UTR VP4 VP2 VP3 VP1 2A1 2A2 2B 2C 3A 3B 3C 3D 3' UTR
Type: human cosavirus A17
5' UTR VP4 VP2 VP3 VP1 2A1 2A2 2B 2C 3A 3B 3C 3D 3' UTR
  Type: human cosavirus A18
5' UTR VP4 VP2 VP3 VP1 2A1 2A2 2B 2C 3A 3B 3C 3D 3' UTR
  Type: human cosavirus A19
5' UTR VP4 VP2 VP3 VP1 2A1 2A2 2B 2C 3A 3B 3C 3D 3' UTR
  Type: human cosavirus A20
5' UTR VP4 VP2 VP3 VP1 2A1 2A2 2B 2C 3A 3B 3C 3D 3' UTR
  Type: human cosavirus A21
5' UTR VP4 VP2 VP3 VP1 2A1 2A2 2B 2C 3A 3B 3C 3D 3' UTR
  Type: human cosavirus A22
5' UTR VP4 VP2 VP3 VP1 2A1 2A2 2B 2C 3A 3B 3C 3D 3' UTR
  Type: human cosavirus A23
5' UTR VP4 VP2 VP3 VP1 2A1 2A2 2B 2C 3A 3B 3C 3D 3' UTR
  Type: human cosavirus A24
5' UTR VP4 VP2 VP3 VP1 2A1 2A2 2B 2C 3A 3B 3C 3D 3' UTR

(White areas indicate genes which haven't yet been sequenced completely; grey areas are where only partial sequences exist)

Virus Strain Region Length Accession No. Reference Comments

Human cosavirus A (HCoSV-A)
HCoSV-A1 0553 CG 7632 FJ438902 Kapoor et al., 2008
HCoSV-A2 6344 5'UTR(p) to 3D(p) 7335 FJ438903 Kapoor et al., 2008  
HCoSV-A3 6572 5'UTR(p) to 3D(p) 6431 FJ438904 Kapoor et al., 2008  
HCoSV-A3 NP7 VP3(p)+VP1(p) 923 JN867765 Kapusinszky et al., 2012 listed as HCoSV-A9
 in GenBank
HCoSV-A3 NG349-2
 VP3(p)+VP1(p) 923 JQ811828 Kapusinszky et al., 2012  
HCoSV-A4 5006 5' UTR(p) to VP3(p) 2106 FJ438905 Kapoor et al., 2008  
2C(p) to 3D(p) 2263 FJ438906 Kapoor et al., 2008  
HCoSV-A5 NG28
 VP3(p)+VP1(p) 905 JN867785 Kapusinszky et al., 2012  
HCoSV-A5 NG24
 VP3(p)+VP1(p) 904 JN867781 Kapusinszky et al., 2012  
HCoSV-A5 NG6
 VP3(p)+VP1(p) 906 JN867771 Kapusinszky et al., 2012  
HCoSV-A5 NG27
 VP3(p)+VP1(p) 905 JN867784 Kapusinszky et al., 2012  
HCoSV-A5 NG25 VP3(p)+VP1(p) 905 JN867782 Kapusinszky et al., 2012  
HCoSV-A6 SH1/China/2009 CG(p) 7262 GU968209 Dai et al., 2010  
HCoSV-A6 TN06-S231 VP3(p)+VP1(p) 908 JN867790 Kapusinszky et al., 2012  
HCoSV-A6 NP8-2 VP3(p)+VP1(p) 908 JQ811822 Kapusinszky et al., 2012  
HCoSV-A6 CMH-N199-11
(Thailand/2011)		 CG(p) 7317 KJ396940 Khamrin & Maneekarn, 2014  
HCoSV-A7 NP11 VP3(p)+VP1(p) 911 JN867768 Kapusinszky et al., 2012  
HCoSV-A7 NG348 VP3(p)+VP1(p) 908 JQ811824 Kapusinszky et al., 2012  
HCoSV-A8 NG349-1 VP3(p)+VP1(p) 905 JQ811827 Kapusinszky et al., 2012  
HCoSV-A8 NG18 VP3(p)+VP1(p) 905 JN867776 Kapusinszky et al., 2012  
HCoSV-A9 NP5 VP3(p)+VP1(p) 915 JN867763 Kapusinszky et al., 2012  
HCoSV-A9 NG366-2
 VP3(p)+VP1(p) 914 JQ811833 Kapusinszky et al., 2012  
HCoSV-A9
 TN06-E96
 VP3(p)+VP1(p) 913 JN867788 Kapusinszky et al., 2012  
HCoSV-A9 NP9 VP3(p)+VP1(p) 914 JN867766 Kapusinszky et al., 2012  
HCoSV-A10 NG26 VP3(p)+VP1(p) 908 JN867783 Kapusinszky et al., 2012  
HCoSV-A10 NP8-3 VP3(p)+VP1(p) 911 JQ811823 Kapusinszky et al., 2012  
HCoSV-A10 NG11
 VP3(p)+VP1(p) 912 JN867772 Kapusinszky et al., 2012  
HCoSV-A11 NP1
 VP3(p)+VP1(p) 881 JN867760 Kapusinszky et al., 2012  
HCoSV-A12 NG14
 VP3(p)+VP1(p) 911 JN867774 Kapusinszky et al., 2012  
HCoSV-A13 NP6
 VP3(p)+VP1(p) 905 JN867764 Kapusinszky et al., 2012  
HCoSV-A14 NG12
 VP3(p)+VP1(p) 902 JN867773 Kapusinszky et al., 2012  
HCoSV-A14 NG376
 VP3(p)+VP1(p) 928 JQ811829 Kapusinszky et al., 2012  
HCoSV-A15 NG23
 VP3(p)+VP1(p) 886 JN867780 Kapusinszky et al., 2012  
HCoSV-A16 NP10
 VP3(p)+VP1(p) 907 JN867767 Kapusinszky et al., 2012  
HCoSV-A17 TN06-E34
 VP3(p)+VP1(p) 905 JN867787 Kapusinszky et al., 2012  
HCoSV-A17 NG3
 VP3(p)+VP1(p) 905 JN867769 Kapusinszky et al., 2012  
HCoSV-A17 TN06-E10
 VP3(p)+VP1(p) 905 JN867786 Kapusinszky et al., 2012  
HCoSV-A17 NG5
 VP3(p)+VP1(p) 904 JN867770 Kapusinszky et al., 2012  
HCoSV-A18 NG15 VP3(p)+VP1(p) 905 JN867775 Kapusinszky et al., 2012  
HCoSV-A19 PK6187 CG(p) 6950 JN867759 Kapusinszky et al., 2012  
HCoSV-A20 NG263 CG(p) 6635 JN867756 Kapusinszky et al., 2012  
HCoSV-A21
 NG295-2
 VP3(p)+VP1(p) 911 JQ811826 Kapusinszky et al., 2012  
HCoSV-A22 NG295-1
 VP3(p)+VP1(p) 914 JQ811825 Kapusinszky et al., 2012  
HCoSV-A23 NG213-2
 VP3(p)+VP1(p) 905 JQ811831 Kapusinszky et al., 2012  
HCoSV-A24 NP8-1
 VP3(p)+VP1(p) 905 JQ811821 Kapusinszky et al., 2012  
HCoSV-A24 NG213-1 VP3(p)+VP1(p) 905 JQ811830 Kapusinszky et al., 2012  
HCoSV-A25 NG2
 VP3(p)+VP1(p) 910

JN867791

 Kapusinszky et al., 2012 Listed as HCoSV-A3
 in GenBank
HCoSv-A? BOL/03-10654C VP3(p)+VP1(p) 482 JX219509 Nix et al., 2013  
HCoSv-A? BOL/03-11688B VP3(p)+VP1(p) 482 JX219510 Nix et al., 2013  
HCoSV-A? 10928/2012/JPN CG 7328 AB920345 Okitsu et al., 2014  
             
HCoSV-A? hu/BOL/02-11683 VP3(p)+VP1(p) 480 JX219495 Nix et al., 2013  
HCoSV-A? hu/BOL/02-10664D VP3(p)+VP1(p) 480 JX219496 Nix et al., 2013  
HCoSV-A? hu/BOL/03-10843B VP3(p)+VP1(p) 388 JX219497 Nix et al., 2013  
HCoSV-A? hu/BOL/02-11686 VP3(p)+VP1(p) 470 JX219498 Nix et al., 2013  
HCoSV-A? hu/BOL/02-11682 VP3(p)+VP1(p) 462 JX219499 Nix et al., 2013  
HCoSV-A? hu/BOL/02-10667C VP3(p)+VP1(p) 483 JX219500 Nix et al., 2013  
HCoSV-A? hu/BOL/03-10666C VP3(p)+VP1(p) 480 JX219501 Nix et al., 2013  
HCoSV-A? hu/BOL/03-10838B VP3(p)+VP1(p) 498 JX219502 Nix et al., 2013  
HCoSV-A? hu/BOL/03-10840B VP3(p)+VP1(p) 486 JX219503 Nix et al., 2013  
HCoSV-A? hu/BOL/03-10841C VP3(p)+VP1(p) 486 JX219504 Nix et al., 2013  
HCoSV-A? hu/BOL/03-11690 VP3(p)+VP1(p) 486 JX219505 Nix et al., 2013  
HCoSV-A? hu/BOL/02-11681B VP3(p)+VP1(p) 478 JX219506 Nix et al., 2013  
HCoSV-A? hu/BOL/02-10812B VP3(p)+VP1(p) 492 JX219507 Nix et al., 2013  
HCoSV-A? pig/BOL/10652C VP3(p)+VP1(p) 369 JX219508 Nix et al., 2013  
             
HCoSV-A* 5008 5' UTR(p) 717 FJ438865 Kapoor et al., 2008  
5' UTR(p) 220 FJ438884 Kapoor et al., 2008  
HCoSV-A* 0002
 5' UTR(p) 220 FJ438867 Kapoor et al., 2008  
HCoSV-A* 0008 5' UTR(p) 220 FJ438868 Kapoor et al., 2008  
HCoSV-A* 0012 5' UTR(p) 220 FJ438869 Kapoor et al., 2008  
HCoSV-A* 0015 5' UTR(p) 220 FJ438870 Kapoor et al., 2008  
HCoSV-A* 0422 5' UTR(p) 220 FJ438871 Kapoor et al., 2008  
HCoSV-A* 0768 5' UTR(p) 220 FJ438872 Kapoor et al., 2008  
HCoSV-A* 0769 5' UTR(p) 220 FJ438873 Kapoor et al., 2008  
HCoSV-A* 0770 5' UTR(p) 220 FJ438874 Kapoor et al., 2008  
HCoSV-A* 0969 5' UTR(p) 220 FJ438875 Kapoor et al., 2008  
HCoSV-A* 0970 5' UTR(p) 220 FJ438876 Kapoor et al., 2008  
HCoSV-A* 0974 5' UTR(p) 220 FJ438877 Kapoor et al., 2008  
HCoSV-A* 0976 5' UTR(p) 220 FJ438878 Kapoor et al., 2008  
HCoSV-A* 1143 5' UTR(p) 220 FJ438879 Kapoor et al., 2008  
HCoSV-A* 1871 5' UTR(p) 220 FJ438880 Kapoor et al., 2008  
HCoSV-A* 1892 5' UTR(p) 220 FJ438881 Kapoor et al., 2008  
HCoSV-A* 2178
 5' UTR(p) 220 FJ438882 Kapoor et al., 2008  
HCoSV-A* 2204 5' UTR(p) 220 FJ438883 Kapoor et al., 2008  
HCoSV-A* 5009
 5' UTR(p) 220 FJ438885 Kapoor et al., 2008  
HCoSV-A* 5016 5' UTR(p) 220 FJ438886 Kapoor et al., 2008  
HCoSV-A* 5019 5' UTR(p) 220 FJ438887 Kapoor et al., 2008  
HCoSV-A* 5038 5' UTR(p) 220 FJ438888 Kapoor et al., 2008  
HCoSV-A* 5046 5' UTR(p) 717 FJ442992 Kapoor et al., 2008  
3D(p) 317 FJ442990 Kapoor et al., 2008  
HCoSV-A* 5048 5' UTR(p) 366 FJ442993 Kapoor et al., 2008  
HCoSV-A* 5192 5' UTR(p) 385 FJ442994 Kapoor et al., 2008  
3D(p) 317 FJ442991 Kapoor et al., 2008  
HCoSV-A* 5550 5' UTR(p) 220 FJ438889 Kapoor et al., 2008  
HCoSV-A* 5842 5' UTR(p) 220 FJ438890 Kapoor et al., 2008  
HCoSV-A* 6178 5' UTR(p) 220 FJ438891 Kapoor et al., 2008  
HCoSV-A* 6187 5' UTR(p) 220 FJ438892 Kapoor et al., 2008  
HCoSV-A* 6341 5' UTR(p) 220 FJ438893 Kapoor et al., 2008  
HCoSV-A* FL2-4-C4/USA/2008 5' UTR(p) 276 GQ243582 Blinkova et al., 2009  
HCoSV-A* FL2-4-C6/USA/2008 5' UTR(p) 276 GQ243583 Blinkova et al., 2009  
HCoSV-A* FL2-5-P1/USA/2008 5' UTR(p) 277 GQ243584 Blinkova et al., 2009  
HCoSV-A* AM326/BRA-AM/2017 CG(p) 7735 MT023104 Lobo et al., unpub.  
             
CG = complete genome
(p) = partial gene sequence
*, type not known

References

Blinkova, O., Rosario, K., Li, L., Kapoor, A., Slikas, B., Bernardin, F., Breitbart, M. and Delwart, E. (2009). Frequent detection of highly diverse variants of cardiovirus, cosavirus, bocavirus, and circovirus in sewage samples collected in the United States. J. Clin. Microbiol. 47: 3507-3513.

Dai, X.Q., Hua, X.G., Shan, T.L., Delwart, E. and Zhao, W. (2010). Human cosavirus infections in children in China. J. Clin. Virol. 48: 228-229.

Kapoor, A., Victoria, J., Simmonds, P., Slikas, E., Chieochansin, T., Naeem, A., Shaukat, S., Sharif, S., Masroor Alam, M., Angez, M., Wang, C., Shafer, R.W., Zaidi, S. and Delwart, E. (2008). A highly prevalent and genetically diversified Picornaviridae genus in South Asian children. Proc. Natl. Aad. Sci., USA 105: 20482-20487. doi 10.1073 pnas.0807979105.

Kapusinszky, B., Phan, T.G., Kapoor, A. and Delwart, E. (2012). Genetic diversity of the genus Cosavirus in the family Picornaviridae: a new species, recombination, and 26 new genotypes. PLoS One. 7(5):e36685. Epub 2012 May 16.

Khamrin, P. and Maneekarn, N. (2014). Detection and genetic characterization of cosavirus in a pediatric patient with diarrhea. Arch Virol. 159: 2485-2489.

Nix, W.A., Khetsuriani, N., Peñaranda, S., Maher, K., Venczel, L., Cselkó, Z., Freire, M.C., Cisterna, D., Lema, C.L., Rosales, P., Rodriguez, J.R., Rodriguez, W., Halkyer, P., Ronveaux, O., Pallansch, M.A. and Oberste, M.S. (2013). Diversity of picornaviruses in rural Bolivia. J. Gen. Virol. 94: 2017-2028.

Okitsu, S., Khamrin, P., Thongprachum, A., Nishimura, S., Kalesaran, A.F., Takanashi, S., Shimizu, H., Hayakawa, S., Mizuguchi, M. and Ushijima, H. (2014). Detection and molecular characterization of human cosavirus in a pediatric patient with acute gastroenteritis, Japan. Infect. Genet. Evol. 28C: 125-129.

 
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