| |
Genus: Cosavirus
Species: Cosavirus D
| |
Type: cosavirus D1 |
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A1 |
2A2 |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| |
Type: cosavirus D2 |
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A1 |
2A2 |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| |
Type: cosavirus D3 |
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A1 |
2A2 |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| |
Type: cosavirus D4 |
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A1 |
2A2 |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
| |
Type: cosavirus D5 |
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A1 |
2A2 |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
(White areas indicate genes which haven't yet been
sequenced completely;
grey areas are where only partial sequences exist)
| Virus |
Strain |
Region |
Length |
Accession No. |
Reference |
Comments |
Cosavirus D (CoSV-D)
|
| CoSV-D1 |
5004 |
CG(p) |
7215 |
FJ438908 |
Kapoor et al., 2008 |
|
CoSV-D2
|
NP4
|
VP1(p) |
905 |
JN867762 |
Kapusinszky et al., 2012 |
|
CoSV-D3
|
NG20 |
VP1(p) |
913 |
JN867778 |
Kapusinszky et al., 2012 |
|
CoSV-D4
|
NP3 |
VP1(p) |
910 |
JN867761 |
Kapusinszky et al., 2012 |
|
CoSV-D4
|
NG366-1 |
VP1(p) |
908 |
JQ811832 |
Kapusinszky et al., 2012 |
|
CoSV-D5
|
TN07-E126 |
VP1(p) |
902 |
JN867789 |
Kapusinszky et al., 2012 |
|
| CoSV-D5 |
NG19 |
VP1(p) |
901 |
JN867777 |
Kapusinszky et al., 2012 |
|
| CoSV-D? |
Amsterdam/1994 |
CG |
7802 |
KJ194505 |
Cotten et al., 2014 |
|
| CoSV-D? |
BOL/02-11677 |
VP3(p)+VP1(p) |
444 |
JX219525 |
Nix et al., 2013 |
|
| CoSV-D? |
BOL/02-10809B |
VP3(p)+VP1(p) |
452 |
JX219526 |
Nix et al., 2013 |
|
| CoSV-D? |
BOL/02-10808C |
VP3(p)+VP1(p) |
474 |
JX219527 |
Nix et al., 2013 |
|
| CoSV-D? |
BOL/02-11685 |
VP3(p)+VP1(p) |
474 |
JX219528 |
Nix et al., 2013 |
|
| CoSV-D? |
BOL/02-11676 |
VP3(p)+VP1(p) |
474 |
JX219529 |
Nix et al., 2013 |
|
| CoSV-D? |
BOL/02-10813B |
VP3(p)+VP1(p) |
474 |
JX219530 |
Nix et al., 2013 |
|
| |
|
|
|
|
|
|
| CoSV-D* |
0960 |
5' UTR(p) |
220 |
FJ438896 |
Kapoor et al., 2008 |
|
| CoSV-D* |
0961 |
5' UTR(p) |
220 |
FJ438897 |
Kapoor et al., 2008 |
|
| CoSV-D* |
0962 |
5' UTR(p) |
220 |
FJ438898 |
Kapoor et al., 2008 |
|
| CoSV-D* |
2096 |
5' UTR(p) |
220 |
FJ438899 |
Kapoor et al., 2008 |
|
| CoSV-D* |
5018 |
5' UTR(p) |
220 |
FJ438900 |
Kapoor et al., 2008 |
|
| CoSV-D* |
5034 |
5' UTR(p) |
220 |
FJ438901 |
Kapoor et al., 2008 |
|
| CoSV-D* |
AL-1-P1 |
5' UTR(p) |
276 |
GQ243585 |
Blinkova et al., 2009 |
USA: 05-Nov-2007 |
| CoSV-D* |
FL1-2-P1 |
5' UTR(p) |
278 |
GQ243586 |
Blinkova et al., 2009 |
USA: 30-Nov-2007 |
| CoSV-D* |
FL2-4-C1 |
5' UTR(p) |
276 |
GQ243587 |
Blinkova et al., 2009 |
USA: 04-Oct-2008 |
| CoSV-D* |
FL2-4-C2 |
5' UTR(p) |
277 |
GQ243588 |
Blinkova et al., 2009 |
USA: 04-Oct-2008 |
| CoSV-D* |
FL2-4-C3 |
5' UTR(p) |
276 |
GQ243589 |
Blinkova et al., 2009 |
USA: 04-Oct-2008 |
| CoSV-D* |
FL2-4-C5 |
5' UTR(p) |
275 |
GQ243590 |
Blinkova et al., 2009 |
USA |
| CoSV-D* |
FL2-4-C7 |
5' UTR(p) |
276 |
GQ243591 |
Blinkova et al., 2009 |
USA |
| CoSV-D* |
FL2-6-C1 |
5' UTR(p) |
246 |
GQ243592 |
Blinkova et al., 2009 |
USA |
| CoSV-D* |
FL2-6-C5 |
5' UTR(p) |
277 |
GQ243593 |
Blinkova et al., 2009 |
USA |
| CoSV-D* |
FL2-6-C6 |
5' UTR(p) |
275 |
GQ243594 |
Blinkova et al., 2009 |
USA |
| CoSV-D* |
FL2-6-C7 |
5' UTR(p) |
277 |
GQ243595 |
Blinkova et al., 2009 |
USA |
| CoSV-D* |
FL2-7-C1 |
5' UTR(p) |
275 |
GQ243596 |
Blinkova et al., 2009 |
USA |
| CoSV-D* |
FL2-7-C3 |
5' UTR(p) |
274 |
GQ243597 |
Blinkova et al., 2009 |
USA |
| CoSV-D* |
FL2-7-C4 |
5' UTR(p) |
274 |
GQ243598 |
Blinkova et al., 2009 |
USA |
| CoSV-D* |
FL2-7-C5 |
5' UTR(p) |
274 |
GQ243599 |
Blinkova et al., 2009 |
USA |
| CoSV-D* |
FL2-7-C8 |
5' UTR(p) |
273 |
GQ243600 |
Blinkova et al., 2009 |
USA |
| CoSV-D* |
FL2-7-C9 |
5' UTR(p) |
275 |
GQ243601 |
Blinkova et al., 2009 |
USA |
| CoSV-D* |
ME-1-P1 |
5' UTR(p) |
276 |
GQ243602 |
Blinkova et al., 2009 |
USA |
| CoSV-D* |
CMHA172/2008 |
5' UTR(p) |
349 |
JF749990 |
Khamrin et al., unpub. |
Thailand: 2008 |
| |
|
|
|
|
|
|
CG = complete genome
(p) = partial gene sequence
*, type not known |
Blinkova, O., Rosario, K., Li, L., Kapoor, A., Slikas, B., Bernardin,
F., Breitbart, M. and Delwart, E. (2009). Frequent detection of
highly diverse variants of cardiovirus, cosavirus, bocavirus, and
circovirus in sewage samples collected in the United States. J. Clin.
Microbiol. 47: 3507-3513.
Cotten, M., Oude Munnink, B., Canuti, M., Deijs, M., Watson, S.J.,
Kellam, P. and van der Hoek L. (2014). Full genome virus detection
in fecal samples using sensitive nucleic acid preparation, deep
sequencing, and a novel iterative sequence classification algorithm.
PLoS One. 9(4):e93269.
Dai, X.Q., Hua, X.G., Shan, T.L., Delwart, E. and Zhao, W. (2010).
Human cosavirus infections in children in China. J. Clin. Virol. 48:
228-229.
Holtz, L.R., Finkbeiner, S.R., Kirkwood, C.D. and Wang, D. (2008).
Identification of a novel picornavirus related to cosaviruses in a
child with acute diarrhea. Virology Journal 5: 159;
doi:10.1186/1743-422X-5-159.
Kapoor, A., Victoria, J., Simmonds, P.,
Slikas, E., Chieochansin, T., Naeem, A., Shaukat, S., Sharif, S.,
Masroor Alam, M., Angez, M., Wang, C., Shafer, R.W., Zaidi, S. and
Delwart, E. (2008).
A highly prevalent and genetically diversified Picornaviridae genus
in South Asian children. Proc. Natl. Aad. Sci., USA 105:
20482-20487. doi 10.1073 pnas.0807979105.
Kapusinszky, B., Phan, T.G., Kapoor, A. and Delwart, E. (2012).
Genetic diversity of the genus Cosavirus in the family
Picornaviridae: a new species, recombination, and 26 new genotypes.
PLoS One. 7(5):e36685. Epub 2012 May 16.
Nix, W.A., Khetsuriani, N., Peñaranda, S., Maher, K., Venczel, L.,
Cselkó, Z., Freire, M.C., Cisterna, D., Lema, C.L., Rosales, P.,
Rodriguez, J.R., Rodriguez, W., Halkyer, P., Ronveaux, O., Pallansch,
M.A. and Oberste, M.S. (2013). Diversity of picornaviruses in rural
Bolivia. J. Gen. Virol. 94: 2017-2028. |
