| |
Genus: Kobuvirus
Species: Aichivirus B
| Type: aichivirus B1 (AiV-B1) |
|
| 5'
UTR |
L |
VP0 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| |
|
|
(White areas indicate genes which haven't yet been
sequenced completely;
grey areas are where only partial sequences exist)
| Virus |
Strain |
Region |
Length
|
Accession No. |
Reference |
Comments |
Aichivirus B1 (AiV-B1) aka bovine kobuvirus 1 (BKV)
|
|
AiV-B1 |
bov/U-1/Japan |
CG |
8374 |
AB084788 |
Yamashita et
al., 2003 |
|
|
AiV-B1 |
bov/BV228/2008/BEL |
VP3(p)+VP1(p) |
690 |
FJ946860 |
Mauroy et al.,
2009 |
|
|
AiV-B1 |
bov/H5/China/2010 |
VP1 |
801 |
KF728711 |
Chang et al.,
2013 |
|
|
AiV-B1 |
bov/H7/China/2010 |
VP1 |
801 |
KF728712 |
Chang et al.,
2013 |
|
|
AiV-B1 |
bov/H8/China/2010 |
VP1 |
801 |
KF728713 |
Chang et al.,
2013 |
|
|
AiV-B1 |
bov/H9/China/2010 |
VP1 |
801 |
KF728714 |
Chang et al.,
2013 |
|
|
AiV-B1 |
bov/H13/China/2010 |
VP1 |
801 |
KF728715 |
Chang et al.,
2013 |
|
|
AiV-B1 |
bov/H16/China/2010 |
VP1 |
801 |
KF728716 |
Chang et al.,
2013 |
|
|
AiV-B1 |
bov/H18/China/2010 |
VP1 |
801 |
KF728717 |
Chang et al.,
2013 |
|
|
AiV-B1 |
bov/H19/China/2010 |
VP1 |
801 |
KF728718 |
Chang et al.,
2013 |
|
|
AiV-B1 |
bov/H23/China/2011 |
VP1 |
801 |
KF728719 |
Chang et al.,
2013 |
|
|
AiV-B1 |
bov/H29/China/2011 |
VP1 |
801 |
KF728720 |
Chang et al.,
2013 |
|
|
AiV-B1 |
bov/GN1155/China/2010 |
VP1 |
801 |
KF728721 |
Chang et al.,
2013 |
|
|
AiV-B1 |
bov/X3-4/China/2007 |
VP1 |
801 |
KF728722 |
Chang et al.,
2013 |
|
|
AiV-B1 |
bov/X3-14/China/2007 |
VP1 |
801 |
KF728723 |
Chang et al.,
2013 |
|
|
AiV-B1 |
bov/X3-23/China/2007 |
VP1 |
801 |
KF728724 |
Chang et al.,
2013 |
|
|
AiV-B1 |
bov/X3-77/China/2007 |
VP1 |
801 |
KF728725 |
Chang et al.,
2013 |
|
|
AiV-B1 |
bov/X3-78/China/2007 |
VP1 |
801 |
KF728726 |
Chang et al.,
2013 |
|
|
AiV-B1 |
bov/X3-143/China/2007 |
VP1 |
801 |
KF728727 |
Chang et al.,
2013 |
|
|
AiV-B1 |
bov/SC1/UK/2013 |
CG(p) |
8293 |
KT003671 |
Gregory et al.,
unpub. |
|
|
AiV-B1 |
bov/EGY-1/2014 |
CG(p) |
8319 |
KY407744 |
Mohamed et al.,
2018 |
|
|
AiV-B1 |
bov/IL35164/USA/2019 |
CG(p) |
8337 |
MN336260 |
Wang et al.,
2020 |
|
| AiV-B1 |
bov/1043507/CAN/2020 |
CG(p) |
8329 |
MW605074 |
Savard et al.,
2021 |
|
|
AiV-B1 |
bov/CN/HB-SJZ/2021 |
CG(p) |
8376 |
MZ603734 |
Wu et al.,
2021 |
|
| AiV-B1 |
bov/CHZ/China/2018 |
CG(p) |
7907 |
MK080265 |
L,H., T,C. and Y,H. |
|
| |
|
|
|
|
|
|
Unassigned bovine-like kobuviruses
in cattle
|
|
BKV-? |
K-3/Japan |
3D(p) |
591 |
AB097152 |
Yamashita et
al., 2003 |
|
|
BKV-? |
K-4/Japan |
3D(p) |
591 |
AB097153 |
Yamashita et
al., 2003 |
|
|
BKV-? |
K-6/Japan |
3D(p) |
591 |
AB097154 |
Yamashita et
al., 2003 |
|
|
BKV-? |
K-35/Japan |
3D(p) |
591 |
AB097155 |
Yamashita et
al., 2003 |
|
|
BKV-? |
K-36/Japan |
3D(p) |
591 |
AB097156 |
Yamashita et
al., 2003 |
|
|
BKV-? |
K-38/Japan |
3D(p) |
591 |
AB097157 |
Yamashita et
al., 2003 |
|
|
BKV-? |
K-44/Japan |
3D(p) |
591 |
AB097158 |
Yamashita et
al., 2003 |
|
|
BKV-? |
K-49/Japan |
3D(p) |
591 |
AB097159 |
Yamashita et
al., 2003 |
|
|
BKV-? |
K-55/Japan |
3D(p) |
591 |
AB097160 |
Yamashita et
al., 2003 |
|
|
BKV-? |
K-60/Japan |
3D(p) |
591 |
AB097161 |
Yamashita et
al., 2003 |
|
|
BKV-? |
N-2/Japan |
3D(p) |
591 |
AB097162 |
Yamashita et
al., 2003 |
|
|
BKV-? |
N-5/Japan |
3D(p) |
591 |
AB097163 |
Yamashita et
al., 2003 |
|
| BKV-? |
CMB02/Thailand |
3D(p) |
591 |
EF659450 |
Khamrin et al.,
2008 |
|
| BKV-? |
CMB03/Thailand |
3D(p) |
591 |
EF659451 |
Khamrin et al.,
2008 |
|
| BKV-? |
CMB06/Thailand |
3D(p) |
591 |
EF659452 |
Khamrin et al.,
2008 |
|
| BKV-? |
CMB07/Thailand |
3D(p) |
591 |
EF659453 |
Khamrin et al.,
2008 |
|
| BKV-? |
CMB10/Thailand |
3D(p) |
591 |
EF659454 |
Khamrin et al.,
2008 |
|
| BKV-? |
CMB11/Thailand |
3D(p) |
591 |
EF659455 |
Khamrin et al.,
2008 |
|
| BKV-? |
Aba-Z20/2002/Hungary |
3D(p) |
862 |
FJ225406 |
Reuter & Egyed, 2009 |
|
| BKV-? |
BV250/2008/BEL |
3D(p) |
612 |
FJ946861 |
Mauroy et al.,
2009 |
|
| BKV-? |
BV253/2008/BEL |
3D(p) |
806 |
FJ946862 |
Mauroy et al.,
2009 |
|
| BKV-? |
cattle/08KB680/KOR/2008 |
3D(p) |
454 |
JQ026109 |
Lee et al.,
2012 |
|
| BKV-? |
bovine/NLD71/2007/Netherlands |
3D(p) |
215 |
HQ877629 |
Barry et al.,
2011 |
|
| BKV-? |
bovine/NLD74/2007/Netherlands |
3D(p) |
216 |
HQ877630 |
Barry et al.,
2011 |
|
| BKV-? |
8TE-11-ITA |
3D(p) |
428 |
JQ900629 |
Di Martino et al.,
2012 |
|
| BKV-? |
21TE-11-ITA |
3D(p) |
576 |
JQ900630 |
Di Martino et al.,
2012 |
|
| BKV-? |
81TE-11-ITA |
3D(p) |
379 |
JQ900631 |
Di Martino et al.,
2012 |
|
| BKV-? |
109TE-11-ITA |
3D(p) |
583 |
JQ900632 |
Di Martino et al.,
2012 |
|
| BKV-? |
118TE-11-ITA |
3D(p) |
574 |
JQ900633 |
Di Martino et al.,
2012 |
|
| BKV-? |
119TE-11-ITA |
3D(p) |
582 |
JQ900634 |
Di Martino et al.,
2012 |
|
| BKV-? |
104TE-11 ITA |
3D(p) |
591 |
JX070084 |
Di Martino et al.,
2012 |
|
|
BKV-? |
BRA02/2012 |
3D(p) |
207 |
KJ402443 |
Ribeiro et al.,
unpub. |
|
| |
|
|
|
|
|
|
CG = complete genome
(p) = partial gene sequence |
Barry, A.F., Ribeiro, J., Alfieri, A.F., van der Poel, W.H. and Alfieri, A.A.
(2011). First detection of kobuvirus in farm animals in Brazil and the
Netherlands. Infect. Genet. Evol. 11: 1811-1814.
Chang, J., Wang, Q., Wang, F., Jiang, Z., Liu, Y. and Yu, L. (2013). Prevalence
and genetic diversity of bovine kobuvirus in China. Arch. Virol., in press.
Di Martino, B., Di Profio, F., Di Felice, E., Ceci, C., Pistilli, M.G. and
Marsilio, F. (2012). Molecular detection of bovine kobuviruses in Italy. Arch.
Virol., in press.
Khamrin, P., Maneekarn, N., Peerakome, S., Okitsu, S., Mizuguchi, M. and
Ushijama, H. (2008). Bovine kobuviruses from cattle with diarrhea. Emerg Infect
Dis. 14: 985–986.
Khamrin P, Maneekarn N, Hidaka S, Kishikawa S, Ushijima K, Okitsu S, Ushijima H.
(2010). Molecular detection of kobuvirus sequences in stool samples collected
from healthy pigs in Japan. Infection, Genetics and Evolution 10: 950–954.
Lee, M.H., Jeoung, H.Y., Lim, J.A., Song, J.Y., Song, D.S. and An, D.J. (2012).
Kobuvirus in South Korean black goats. Virus Genes 45: 186-189. Epub 2012 Apr
12.
Mauroy, A., Scipioni, A., Mathijs, E., Thys, C. and Thiry, E. (2009). Molecular
detection of kobuviruses and recombinant noroviruses in cattle in continental
Europe. Arch. Virol. 154: 1841-1845. Epub 2009 Oct 9.
Mohamed, F.F., Mansour, S.M.G, Orabi, A., El-Araby, I.E., Ng, T.F.F., Mor, S.K.
and Goyal, S.M. (2018). Detection and genetic characterization of bovine
kobuvirus from calves in Egypt. Arch Virol. 2018 Feb 8. doi:
10.1007/s00705-018-3758-1. [Epub ahead of print]
Okitsu, S., Khamrin, P., Thongprachum, A., Hidaka, S., Kongkaew, S., Kongkaew,
A., Maneekarn, N., Mizuguchi, M., Hayakawa, S. and Ushijima, H. (2011). Sequence
analysis of porcine kobuvirus VP1 region detected in pigs in Japan and Thailand.
Virus Genes 44: 253-257. Epub 2011 Nov 23.
Reuter, G. and Egyed L. (2009). Bovine kobuvirus in Europe. Emerg. Infect. Dis.
15: 822-823.
Savard C, Ariel O, Fredrickson R, Wang L, Broes A. Detection and genome
characterization of bovine kobuvirus (BKV) in faecal samples from diarrhoeic
calves in Quebec, Canada. Transbound Emerg Dis. 2021 Mar 31. doi:
10.1111/tbed.14086. Epub ahead of print. PMID: 33788413.
Wang L, Fredrickson R, Duncan M, Samuelson J, Hsiao SH. Bovine Kobuvirus in
Calves with Diarrhea, United States. Emerg Infect Dis. 2020 Jan;26(1):176-178.
doi: 10.3201/eid2601.191227. PubMed PMID: 31855534; PubMed Central PMCID:
PMC6924891.
Wu Q, Li J, Wang W, Zhou J, Wang D, Fan B, Zhang X, Sun D, Gong G, Suolang S, Li
B. Next-Generation Sequencing Reveals Four Novel Viruses Associated with Calf
Diarrhea. Viruses. 2021; 13(10):1907. https://doi.org/10.3390/v13101907.
Yamashita, T., Ito, M., Kabashima,
Y., Tsuzuki, H., Fujiura, A. and Sakae, K. (2003). Isolation and
characterization of a new species of kobuvirus associated with cattle. J.
Gen. Virol. 84: 3069-3077.
Page established 18 November 2002
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