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Genus: Aphthovirus
Species: Equine rhinitis A virus
Serotype: Equine rhinitis A virus 1 (ERAV-1)
(formerly equine rhinovirus
1) |
|
| 5' UTR |
L |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
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(White areas indicate genes which haven't yet been
sequenced completely;
grey areas are where only partial sequences exist)
| Virus |
Strain |
Region |
Length |
Accession No. |
Reference |
Comments |
Equine rhinitis A virus 1 (ERAV-1)
|
| ERAV-1 |
PERV (Beckenham,
UK, c.1962) |
CG(p) |
7734 |
X96870 |
Wutz et al., 1996 |
~50 nt missing from 5' end |
| P1 |
2352 |
AF347671 |
Varrasso et al., 2001 |
|
| 3D(p)+3'UTR |
438 |
EF204767 |
Wernery et al.,
2008 |
|
| ERAV-1 |
PERV-1 (UK, c.62) |
CG |
7782 |
DQ272578 |
Aminev and Palmenberg, unpublished |
|
| ERAV-1 |
T3 (USA) |
CG |
7778 |
DQ268580 |
Aminev and Palmenberg, unpublished |
|
| ERAV-1 |
Plowright (USA) |
CG(p) |
7442 |
DQ272127 |
Aminev and Palmenberg, unpublished |
~360 nt missing from 5' end |
| ERAV-1 |
U188 (USA) |
CG(p) |
7444 |
DQ272128 |
Aminev and Palmenberg, unpublished |
~360 nt missing from 5' end |
| ERAV-1 |
T10 (USA) |
CG(p) |
7442 |
DQ272577 |
Aminev and Palmenberg, unpublished |
~360 nt missing from 5' end |
| ERAV-1 |
NM11/67 |
P1 |
2352 |
FJ607143 |
Tuthill et al., 2009 |
Newmarket,
UK,
January 1967 |
| VP1(p) |
199 |
Y14455 |
N.J. Knowles & F. Lin, unpub. |
| VP1 |
738 |
EF204771 |
Wernery et al.,
2008 |
| 3D(p)+3'UTR |
441 |
EF204768 |
Wernery et al.,
2008 |
| ERAV-1 |
V1722/70 (SWI) |
VP1 |
738 |
EF204770 |
Wernery et al.,
2008 |
|
| ERAV-1 |
V1722/70 (SWI) |
P1 |
2352 |
AF347675 |
Varrasso et al., 2001 |
|
| ERAV-1 |
P200/75 (SWI) |
P1 |
2352 |
AF347676 |
Varrasso et al., 2001 |
|
| ERAV-1 |
P346/75 (SWI) |
P1 |
2352 |
AF347677 |
Varrasso et al., 2001 |
|
| ERAV-1 |
393/76 (South
Australia, 1976) |
CG(p) |
7636 |
L43052 |
Li et al., 1996 |
5' end of the genome missing |
| P1 |
2352 |
AF347668 |
Varrasso et al., 2001 |
|
| ERAV-1 |
4066/79 (USA) |
P1 |
2352 |
AF347674 |
Varrasso et al., 2001 |
|
| ERAV-1 |
544/82 (SWI) |
P1 |
2352 |
AF347673 |
Varrasso et al., 2001 |
|
| ERAV-1 |
967/90 (AUS) |
P1 |
2352 |
AF347669 |
Varrasso et al., 2001 |
|
| ERAV-1 |
P1316/92 (SWI) |
P1 |
2352 |
AF347678 |
Varrasso et al., 2001 |
|
| ERAV-1 |
360007 (USA) |
P1 |
2352 |
AF347672 |
Varrasso et al., 2001 |
|
| ERAV-1 |
D1305-03 (Dubai, UAE) (dromedary) |
CG(p) |
7681 |
KM269483 |
Logan et al., 2014 |
5' end of the genome missing |
| VP1 |
738 |
EF204772 |
Wernery et al.,
2008 |
|
| 3D(p)+3'UTR |
441 |
EF204769 |
Wernery et al.,
2008 |
|
| ERAV-1 |
KRHERAV1 |
3D(p) |
174 |
HM234082 |
Ko et al., unpub. |
South Korea; 2008 |
| ERAV-1 |
KRHERAV2 |
3D(p) |
174 |
HM234083 |
Ko et al., unpub. |
South Korea; 2008 |
| ERAV-1 |
ON/05 |
CG(p) |
7839 |
JX294351 |
Diaz-Mendez et al.,
2013 |
Canada: 2005 |
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CG = complete genome
(p) = partial gene sequence. |
Aminev, A. and Palmenberg, A.C.P. Comparative genomics among equine rhinitis A
viruses. Unpublished.
Diaz-Méndez, A., Viel, L., Shewen, P. and Nagy, E.
(2013). Genomic analysis of a Canadian equine rhinitis A virus reveals
low diversity among field isolates. Virus Genes 46: 280-286.
Li, F., Browning, G.F., Studdert, M.J. and Crabb, B.S. (1996). Equine rhinovirus 1 is
more closely related to foot-and-mouth disease virus than to other picornaviruses. Proc.
Natl. Acad. Sci. USA 93: 990-995.
Logan, G., Freimanis, G.L., King, D.J.,
Valdazo-González, B., Bachanek-Bankowska, K., Sanderson, N.D., Knowles,
N.J., King, D.P. and Cottam, E.M. (2014). A universal protocol to
generate consensus level genome sequences for foot-and-mouth disease
virus and other positive-sense polyadenylated RNA viruses using the
Illumina MiSeq. BMC Genomics. 2014 Sep 30;15(1):828. Epub ahead of
print.
Tuthill, T.J., Harlos, K., Walter, T.S., Knowles,
N.J., Groppelli, E., Rowlands, D.J., Stuart, D.I. and Fry, E.E. (2009).
Equine rhinitis A virus and its low pH empty particle: clues towards an
aphthovirus entry mechanism? PLoS Pathog. 5(10): e1000620.
Varrasso, A., Drummer, H.E., Huang, J., Stevenson, R.A., Ficorilli, N., Studdert, M.J.
and Hartley, C.A. ( 2001). Sequence conservation and antigenic variation of the structural proteins
equine rhinitis virus A. J. Virol. 75: 10550-10556.
Wernery, U., Knowles, N.J., Hamblin, C., Wernery, R.,
Joseph, S., Kinne, J. and Nagy, P. (2008). Abortions in dromedaries (Camelus
dromedarius) caused by equine rhinitis A virus. Journal of General
Virology 89: 660-666.
Wutz, G., Auer, H., Nowotny, N., Grosse, B., Skern, T., Kuechler, E. (1996). Equine
rhinovirus serotypes 1 and 2: relationship to each other and to aphthoviruses and
cardioviruses. J. gen. Virol. 77: 1719-1730.
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