|
Genus: Cardiovirus
Species: Cardiovirus ruekerti (formerly
Cardiovirus A)
(White areas indicate genes which haven't yet been
sequenced;
grey areas are where only partial sequences exist)
references
Virus |
Strain |
Region |
Length |
Accession No. |
Reference |
Comments |
|
AUSTRALIA |
EMCV-1 |
bov/75114 |
2B(p)+2C(p) |
380 |
JQ217415 |
Diallo et al., 2013 |
|
EMCV-1 |
pig/7-BSL |
2B(p)+2C(p) |
374 |
JQ217416 |
Diallo et al., 2013 |
|
EMCV-1 |
pig/N3223 |
2B(p)+2C(p) |
358 |
JQ217417 |
Diallo et al., 2013 |
|
|
|
|
|
|
|
|
BELGIUM |
EMCV-1 |
pig/BEL-2887A/91 |
VP3(p)+VP1(p) |
480 |
Y14456 |
Koenen et al., 1997 |
|
3D(p) |
230 |
AJ235700 |
Koenen et al., 1999 |
|
CG |
7730 |
AF356822 |
Kassimi et al., 2002 |
|
EMCV-1 |
pig/BEL-279/95 |
VP3(p)+VP1(p) |
223 |
AJ235680 |
Koenen et al., 1999 |
|
3D(p) |
230 |
AJ235701 |
Koenen et al., 1999 |
|
5'UTR(p) |
360 |
AJ617368 |
Denis et al., 2006 |
|
L+P1 |
2709 |
AJ617361 |
Denis et al., 2006 |
|
P1 |
2502 |
DQ835184 |
Hammoumi et al., 2012 |
|
3'UTR |
123 |
AJ617374 |
Denis et al., 2006 |
|
EMCV-1 |
pig/BEL-357/95 |
3D(p) |
230 |
AJ235702 |
Koenen et al., 1999 |
|
EMCV-1 |
rat/BEL-359/95 |
3D(p) |
230 |
AJ235703 |
Koenen et al., 1999 |
|
EMCV-1 |
pig/BEL-371/95 |
VP3(p)+VP1(p) |
214 |
AJ235681 |
Koenen et al., 1999 |
|
3D(p) |
230 |
AJ235704 |
Koenen et al., 1999 |
|
EMCV-1 |
pig/BEL-440/95 |
5'UTR(p) |
360 |
AJ617367 |
Denis et al., 2006 |
|
L+P1 |
2703 |
AJ617360 |
Denis et al., 2006 |
|
3'UTR |
123 |
AJ617373 |
Denis et al., 2006 |
|
EMCV-1 |
pig/BEL-475/95 |
3D(p) |
230 |
AJ235705 |
Koenen et al., 1999 |
|
EMCV-1 |
pig/BEL-740/95 |
3D(p) |
230 |
AJ235706 |
Koenen et al., 1999 |
|
EMCV-1 |
pig/BEL-810/95 |
VP3(p)+VP1(p) |
213 |
AJ235682 |
Koenen et al., 1999 |
|
3D(p) |
230 |
AJ235707 |
Koenen et al., 1999 |
|
EMCV-1 |
pig/BEL-2062/96 |
3D(p) |
230 |
AJ235709 |
Koenen et al., 1999 |
|
EMCV-1 |
pig/BEL-2105/96 |
VP3(p)+VP1(p) |
218 |
AJ235683 |
Koenen et al., 1999 |
|
3D(p) |
230 |
AJ235710 |
Koenen et al., 1999 |
|
EMCV-1 |
pig/BEL-2106/96 |
VP3(p)+VP1(p) |
236 |
AJ235684 |
Koenen et al., 1999 |
|
3D(p) |
230 |
AJ235711 |
Koenen et al., 1999 |
|
EMCV-1 |
rat/BEL-1086C |
CG |
7340 |
DQ835185 |
Guy et al., 2009 |
part of 5' UTR missing |
|
|
|
|
|
|
|
CENTRAL
AFRICAN REPUBLIC |
EMCV-1 |
gerbil/AnrB-3741/CAR/1983 |
CG(p) |
7548 |
KU955338 |
Berthet et al., unpub. |
s-frag missing |
|
|
|
|
|
|
|
CHINA |
EMCV-1 |
pig/BJC3 (Beijing) |
CG |
7746 |
DQ464062 |
Zhang et al., 2007 |
6th passage in BHK-21 cells |
EMCV-1 |
pig/HB1 (Hebei Province) |
CG |
7735 |
DQ464063 |
Zhang et al., 2007 |
6th passage in BHK-21 cells |
EMCV-1 |
pig/Hebei/2010/2 |
5' UTR |
727 |
KC757343 |
Zhang, unpub. |
aborted foetus |
EMCV-1 |
GX0601 |
CG |
7729 |
FJ604852 |
Zhao et al., unpub. |
|
EMCV-1 |
GX0602 |
CG |
7725 |
FJ604853 |
Zhao et al., unpub. |
|
EMCV-1 |
pig/TJ |
2C |
978 |
EU371993 |
Song et al., unpub. |
|
EMCV-1 |
pig/GXLC (Guangxi, May-2008) |
CG |
7725 |
FJ897755 |
Shi et al., 2010 |
|
EMCV-1 |
pig/NJ08 (Jun-2008) |
CG |
7724 |
HM641897 |
Bai et al., 2012 |
|
EMCV-1 |
pig/HB10 (Nov-2010) |
pp-coding |
6879 |
JQ864080 |
Lin et al., 2012 |
|
EMCV-1 |
pig/BD2 |
pp-coding |
6879 |
KC762214 |
Yuan et al., 2014 |
|
CG |
7741 |
KF709977 |
Yuan et al., 2013 |
|
EMCV-1 |
pig/JZ0501/China/2012 |
VP1 |
831 |
KC110082 |
Chang et al., unpub. |
|
EMCV-1 |
domesticated wild boar/JZ0502/China/2012 |
VP1 |
831 |
KC110083 |
Chang et al., unpub. |
|
EMCV-1 |
mouse/JZ0503/China/2012 |
VP1 |
831 |
KC110084 |
Chang et al., unpub. |
|
EMCV-1 |
tiger/FJ13/China/2013 |
CG |
7739 |
KF293299 |
Liu et al., 2013a,b |
|
EMCV-1 |
pig/XX1/China/2012 |
pp-coding |
6849 |
KF598860 |
Yan et al., unpub. |
|
EMCV-1 |
pig/XX2/China/2012 |
pp-coding |
6863 |
KF598861 |
Yan et al., unpub. |
|
EMCV-1 |
pig/XX3/China/2012 |
pp-coding |
6863 |
KF598862 |
Yan et al., unpub. |
|
EMCV-1 |
pig/JX/China/2012 |
pp-coding |
6849 |
KF598863 |
Yan et al., unpub. |
|
EMCV-1 |
pig/ZM/China/2012 |
pp-coding |
6861 |
KF598864 |
Yan et al., unpub. |
|
EMCV-1 |
aardvark/HNXX13/China/2013 |
CG |
7725 |
KF771002 |
Chang et al., 2014 |
|
EMCV-1 |
pig/HNJZ1201/China/2012 |
CG |
7735 |
KF836386 |
Liu et al., 2017 |
|
EMCV-1 |
domesticated boar/JZ1202/China/2012 |
CG |
7735 |
KF836387 |
Liu et al., 2017 |
|
EMCV-1 |
mouse/JZ1203/China/2012 |
CG |
7725 |
KF836388 |
Liu et al., 2017 |
|
EMCV-1 |
pig/YM13/China/2013 |
CG |
7729 |
KF836389 |
Liu et al., 2017 |
|
EMCV-1 |
pig/YY13/China/2013 |
CG |
7724 |
KF836390 |
Liu et al., 2017 |
|
EMCV-1 |
pig/GS01/Gansu/China/2013 |
CG |
7717 |
KJ524643 |
Feng et al., unpub. |
|
EMCV-1 |
dog/C15/China/2015 |
CG(p) |
6879 |
KU664327 |
Luo et al., 2017 |
|
EMCV-1 |
pig/HLJ/China/2016 |
CG |
7734 |
MH191297 |
Liu & Li, unpub. |
|
|
|
|
|
|
|
|
CYPRUS |
EMCV-1 |
pig/CYP-003/94 |
VP3(p)+VP1(p) |
208 |
AJ235687 |
Knowles et al., unpub. |
|
3D(p) |
230 |
AJ235731 |
Koenen et al., 1999 |
|
EMCV-1 |
pig/CYP-108/95 |
3D(p) |
230 |
AJ235730 |
Koenen et al., 1999 |
|
5'UTR(p) |
360 |
AJ617366 |
Denis et al., 2006 |
|
L+P1 |
2703 |
AJ617359 |
Denis et al., 2006 |
|
3'UTR |
123 |
AJ617372 |
Denis et al., 2006 |
|
EMCV-1 |
pig/CYP-129/96 |
VP3(p)+VP1(p) |
220 |
AJ235688 |
Knowles et al., unpub. |
|
3D(p) |
230 |
AJ235729 |
Koenen et al., 1999 |
|
EMCV-1 |
mouse/CYP-138/96 (Apodemus sp.) |
3D(p) |
230 |
AJ235728 |
Koenen et al., 1999 |
|
|
|
|
|
|
|
|
DEMOCRATIC REPUBLIC OF THE
CONGO |
EMCV-1 |
bonobo/SPU 64/03 (Pan paniscus) |
3D(p) |
273 |
GU181317 |
Jones et al., 2011 |
|
|
|
|
|
|
|
|
FRANCE |
EMCV-1 |
pig/FRA-919/95 |
VP3(p)+VP1(p) |
249 |
AJ235686 |
Koenen et al., 1999 |
|
3D(p) |
230 |
AJ235708 |
Koenen et al., 1999 |
|
EMCV-1 |
elephant/FRA/SIG/1/2013 |
CG |
7875 |
MT250508 |
Romey et al., 2020 |
Loxodonta africana |
EMCV-1 |
rat/FRA/SIG/1/2014 |
CG |
7870 |
MT250509 |
Romey et al., 2020 |
Rattus rattus |
EMCV-1 |
rat/FRA/SIG/2/2014 |
CG |
7875 |
MT250510 |
Romey et al., 2020 |
Rattus rattus |
EMCV-1 |
rat/FRA/SIG/3/2014 |
CG |
7874 |
MT250511 |
Romey et al., 2020 |
Rattus rattus |
|
|
|
|
|
|
|
GREECE |
EMCV-1 |
pig/GRE-432/86 |
VP3(p)+VP1(p) |
249 |
AJ235689 |
Knowles et al., unpub. |
|
3D(p) |
230 |
AJ235714 |
Koenen et al., 1999 |
|
EMCV-1 |
pig/GRE-042/87 |
VP3(p)+VP1(p) |
241 |
AJ235690 |
Knowles et al., unpub. |
|
3D(p) |
230 |
AJ235722 |
Koenen et al., 1999 |
|
EMCV-1 |
pig/GRE-538/87 |
VP3(p)+VP1(p) |
249 |
AJ235691 |
Knowles et al., unpub. |
|
3D(p) |
230 |
AJ235713 |
Koenen et al., 1999 |
|
EMCV-1 |
pig/GRE-544/88 |
VP3(p)+VP1(p) |
243 |
AJ235692 |
Knowles et al., unpub. |
|
3D(p) |
230 |
AJ235712 |
Koenen et al., 1999 |
|
EMCV-1 |
pig/GRE-001/89 |
VP3(p)+VP1(p) |
251 |
AJ131434 |
Knowles et al., unpub. |
|
3D(p) |
230 |
AJ235727 |
Koenen et al., 1999 |
|
EMCV-1 |
pig/GRE-093/89 |
VP3(p)+VP1(p) |
243 |
AJ235693 |
Knowles et al., unpub. |
|
3D(p) |
230 |
AJ235721 |
Koenen et al., 1999 |
|
EMCV-1 |
pig/GRE-424/90 |
VP3(p)+VP1(p) |
275 |
Y14458 |
Koenen et al., 1997 |
|
3D(p) |
230 |
AJ235715 |
Koenen et al., 1999 |
|
5'UTR(p) |
360 |
AJ617369 |
Denis et al., 2006 |
|
L+P1 |
2703 |
AJ617362 |
Denis et al., 2006 |
|
3'UTR |
123 |
AJ617375 |
Denis et al., 2006 |
|
EMCV-1 |
pig/GRE-317/91 |
VP3(p)+VP1(p) |
247 |
AJ235694 |
Knowles et al., unpub. |
|
3D(p) |
230 |
AJ235716 |
Koenen et al., 1999 |
|
EMCV-1 |
pig/GRE-003/92 |
VP3(p)+VP1(p) |
243 |
AJ235695 |
Knowles et al., unpub. |
|
3D(p) |
230 |
AJ235725 |
Koenen et al., 1999 |
|
EMCV-1 |
pig/GRE-021/92 |
3D(p) |
230 |
AJ235724 |
Koenen et al., 1999 |
|
EMCV-1 |
pig/GRE-211/92 |
VP3(p)+VP1(p) |
225 |
AJ131435 |
Knowles et al., unpub. |
|
3D(p) |
230 |
AJ235717 |
Koenen et al., 1999 |
|
EMCV-1 |
pig/GRE-027/94 |
3D(p) |
230 |
AJ235723 |
Koenen et al., 1999 |
|
EMCV-1 |
pig/GRE-175/95 |
VP3(p)+VP1(p) |
224 |
AJ235696 |
Knowles et al., unpub. |
|
3D(p) |
230 |
AJ235720 |
Koenen et al., 1999 |
|
EMCV-1 |
pig/GRE-180/95 |
3D(p) |
230 |
AJ235719 |
Koenen et al., 1999 |
|
EMCV-1 |
rat/GRE-181/95 |
VP3(p)+VP1(p) |
225 |
AJ235697 |
Knowles et al., unpub. |
|
3D(p) |
230 |
AJ235718 |
Koenen et al., 1999 |
|
EMCV-1 |
pig/GRE-001/97 |
3D(p) |
230 |
AJ235726 |
Koenen et al., 1999 |
|
|
|
|
|
|
|
|
ITALY |
EMCV-1 |
pig/ITL-135/86 |
VP3(p)+VP1(p) |
495 |
Y14457 |
Koenen et al., 1997 |
|
3D(p) |
230 |
AJ235733 |
Koenen et al., 1999 |
|
5'UTR |
360 |
AJ617365 |
Denis et al., 2006 |
|
L+P1 |
2703 |
AJ617358 |
Denis et al., 2006 |
|
3'UTR |
123 |
AJ617371 |
Denis et al., 2006 |
|
EMCV-1 |
pig/ITL-71c/88 |
VP3(p)+VP1(p) |
203 |
AJ006857 |
Knowles et al., 1998 |
|
EMCV-1 |
pig/ITL-002/88 |
VP3(p)/VP1(p) |
284 |
AJ006860 |
Knowles et al., 1998 |
|
3D(p) |
230 |
AJ235732 |
Koenen et al., 1999 |
|
EMCV-1 |
pig/ITL-250/88 |
VP3(p)+VP1(p) |
279 |
AJ006858 |
Knowles et al., 1998 |
|
EMCV-1 |
pig/ITL-276/88 |
VP3(p)+VP1(p) |
252 |
AJ006859 |
Knowles et al., 1998 |
|
EMCV-1 |
dormouse/ITL-276/90 |
VP3(p)+VP1(p) |
212 |
AJ006861 |
Knowles et al., 1998 |
|
EMCV-1 |
dormouse/ITL-292/90 |
VP3(p)+VP1(p) |
277 |
AJ006862 |
Knowles et al., 1998 |
|
EMCV-1 |
red squirrel/ITL-001/92 |
VP3(p)+VP1(p) |
321 |
AJ006863 |
Knowles et al., 1998 |
|
EMCV-1 |
pig/ITL-001/96 |
VP3(p)+VP1(p) |
214 |
AJ006864 |
Knowles et al., 1998 |
|
3D(p) |
230 |
AJ235734 |
Koenen et al., 1999 |
|
5'UTR |
360 |
AJ617364 |
Denis et al., 2006 |
|
L+P1 |
2703 |
AJ617357 |
Denis et al., 2006 |
|
3'UTR |
123 |
AJ617370 |
Denis et al., 2006 |
|
EMCV-1 |
porcupine/80843/ITL/2012 |
VP1 |
831 |
OL963560 |
Cardeti et al., 2016 |
Hystrix cristata |
3D(p) |
235 |
KY201173 |
Cardeti et al., 2016 |
EMCV-1 |
macaque/64771/ITL/2012 |
VP1 |
831 |
OL963559 |
Cardeti et al., 2016 |
Macaca sylvanus |
3D(p) |
242 |
KY201174 |
Cardeti et al., 2016 |
EMCV-1 |
pig/ITA-039/19-BS |
VP1 |
831 |
OL840475 |
Foglia
et al.,
unpublished |
|
EMCV-1 |
pig/ITA-038/19-BS |
VP1 |
831 |
OL840476 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-036-19-BS |
VP1 |
831 |
OL840477 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-035/19-BS |
VP1 |
831 |
OL840478 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-032/19-RE |
VP1 |
831 |
OL840479 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-024/19-PG |
VP1 |
831 |
OL840480 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-012/19-RE |
VP1 |
831 |
OL840481 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-022/18-RE |
VP1 |
831 |
OL840482 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-007/18-RE |
VP1 |
831 |
OL840483 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-108/16-RA |
VP1 |
831 |
OL840484 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-106/16-VR |
VP1 |
831 |
OL840485 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-099/16-BG |
VP1 |
831 |
OL840486 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-090/16-LO |
VP1 |
831 |
OL840487 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-083/16-MO |
VP1 |
831 |
OL840488 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-079/16-RE |
VP1 |
831 |
OL840489 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-064/16-BG |
VP1 |
831 |
OL840490 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-052/16-BS |
VP1 |
831 |
OL840491 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-041/16-BG |
VP1 |
831 |
OL840492 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-036/16-PG |
VP1 |
831 |
OL840493 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-035/16-MO |
VP1 |
831 |
OL840494 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-034/16-CR |
VP1 |
831 |
OL840495 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-028/16-MO |
VP1 |
831 |
OL840496 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-025/16-BS |
VP1 |
831 |
OL840497 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-021/16-CN |
VP1 |
831 |
OL840498 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-015/16-CR |
VP1 |
831 |
OL840499 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-008/16-BG |
VP1 |
831 |
OL840500 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-006/16-BS |
VP1 |
831 |
OL840501 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-005/16-PV |
VP1 |
831 |
OL840502 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-042/15-BS |
VP1 |
831 |
OL840503 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-035/15-PC |
VP1 |
831 |
OL840504 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-032/15-PG |
VP1 |
831 |
OL840505 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-031/15-BS |
VP1 |
831 |
OL840506 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-026/15-PG |
VP1 |
831 |
OL840507 |
Foglia
et al., unpublished |
|
EMCV-1 |
lemur/ITA-016/15-VR |
VP1 |
831 |
OL840508 |
Foglia
et al.,
unpublished |
|
EMCV-1 |
pig/ITA-015/15-BS |
VP1 |
831 |
OL840509 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-012/15-BS |
VP1 |
831 |
OL840510 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-010/15-PC |
VP1 |
831 |
OL840511 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-007/15-MO |
VP1 |
831 |
OL840512 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-006/15-BS |
VP1 |
831 |
OL840513 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-005/15-BS |
VP1 |
831 |
OL840514 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-003/15-PR |
VP1 |
831 |
OL840515 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-002/15-CR |
VP1 |
831 |
OL840516 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-085/14-BS |
VP1 |
831 |
OL840517 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-082/14-MN |
VP1 |
831 |
OL840518 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-076/14-PV |
VP1 |
831 |
OL840519 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-065/14-CR |
VP1 |
831 |
OL840520 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-060/14-CR |
VP1 |
831 |
OL840521 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-047/14-BG |
VP1 |
831 |
OL840522 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-046/14-PN |
VP1 |
831 |
OL840523 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-037/14-BS |
VP1 |
831 |
OL840524 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-028/14-MN |
VP1 |
831 |
OL840525 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-022/14-VR |
VP1 |
831 |
OL840526 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-041/13-VR |
VP1 |
831 |
OL840527 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-038/13-MN |
VP1 |
831 |
OL840528 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-035/13-PC |
VP1 |
831 |
OL840529 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-034/13-BS |
VP1 |
831 |
OL840530 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-031/13-BS |
VP1 |
831 |
OL840531 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-029/13-BS |
VP1 |
831 |
OL840532 |
Foglia
et al., unpublished |
|
EMCV-1 |
lemur/ITA-025/13-VR |
VP1 |
831 |
OL840533 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-024/13-BS |
VP1 |
831 |
OL840534 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-021/13-BS |
VP1 |
831 |
OL840535 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-020/13-BS |
VP1 |
831 |
OL840536 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-019/13-BS |
VP1 |
831 |
OL840537 |
Foglia
et al., unpublished |
|
EMCV-1 |
lemur/ITA-016/13-VR |
VP1 |
831 |
OL840538 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-015/13-CR |
VP1 |
831 |
OL840539 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-013/13-VR |
VP1 |
831 |
OL840540 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-010/13-BS |
VP1 |
831 |
OL840541 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-007/13-MN |
VP1 |
831 |
OL840542 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-004/13-PV |
VP1 |
831 |
OL840543 |
Foglia
et al., unpublished |
|
EMCV-1 |
pig/ITA-001/13-BS |
VP1 |
831 |
OL840544 |
Foglia
et al., unpublished |
|
|
|
|
|
|
|
|
JAPAN? |
EMCV-1 |
NIID-NU1 |
CG(p) |
7263 |
LC508268 |
Doysabas et al., 2020 |
|
|
|
|
|
|
|
|
NETHERLANDS |
EMCV-1 |
pig/NET-001/88 |
VP3(p)+VP1(p)
|
282 |
AJ006856 |
Knowles et al., 1998 |
|
|
|
|
|
|
|
|
PANAMA |
EMCV-1 |
pig/D (derived from M
which in turn
was derived from 1138/
Panama/58) (ifp-phenotype; Cohen) |
CG |
7842 |
M37588 |
Cohen et al., 1988 |
|
CG |
7829 |
M22458 |
Bae et al., 1989 |
|
VP1 |
831 |
M20167 |
Eun et al., 1988 |
|
EMCV-1 |
pig/B (derived from M which in turn was
derived from 1138/Panama/58) |
CG |
7825 |
M22457 |
Bae et al., 1989 |
|
VP1 |
831 |
L40427 |
Eun et al., 1988 |
|
5'UTR(p) |
103 |
M16802 |
Jordan et al., 1987 |
|
EMCV-1 |
pig/DV1 (derived from D which was derived
from M which in turn was derived from
1138/Panama/58) |
CG |
7828 |
na |
Bae et al. 1990 ? |
|
EMCV-1 |
pig/PV21 (derived from M which in turn
was derived from 1138/ Panama/58
(but sequence
is related to 'R')) |
CG |
7861 |
X74312 |
Zimmerman et al., 1994 |
|
EMCV-1 |
pig/PV2 (derived from M which in turn was
derived from 1138/ Panama/58) |
CG |
7820 |
X87335 |
Nelsen-Salz et al., 1996 |
|
|
|
|
|
|
|
|
PERU |
EMCV-1 |
human/Peru-2004/10854 |
3D(p) |
231 |
EU979543 |
Oberste et al., 2009 |
|
5'UTR(p) |
142 |
EU979544 |
Oberste et al., 2009 |
|
VP1(p) |
736 |
EU979545 |
Oberste et al., 2009 |
|
EMCV-1 |
human/Peru-2004/10855 |
3D(p) |
219 |
EU979546 |
Oberste et al., 2009 |
|
5'UTR(p) |
145 |
EU979547 |
Oberste et al., 2009 |
|
VP1(p) |
738 |
EU979548 |
Oberste et al., 2009 |
|
|
|
|
|
|
|
|
PORTUGAL |
EMCV-1 |
vole/Mi7-ACPT (Microtus lusitanicus)
Portugal, 19-Apr-2010 |
VP2(p) |
468 |
JX046005 |
Carvalho et al., unpub. |
|
|
|
|
|
|
|
|
REPUBLIC OF KOREA |
EMCV-1 |
pig/CBNU |
CG |
7713 |
DQ517424 |
Song et al., unpublished |
|
EMCV-1 |
pig/K3/South Korea/1990 |
CG |
7731 |
EU780148 |
An et al., 2009 |
|
EMCV-1 |
pig/K11/South Korea/1990 |
CG |
7744 |
EU780149 |
An et al., 2009 |
|
|
|
|
|
|
|
|
RUSSIA |
EMCV-1 |
pig/Omsk-93 |
VP1(p) |
791 |
Y15445 |
Amineva et al., unpub. |
|
EMCV-1 |
pig/1029 |
VP1(p) |
810 |
Y15448 |
Amineva et al., unpub. |
|
EMCV-1 |
baboon/3761IMP/RUS/2007 |
CG |
7714 |
KX231802 |
Vyshemirskii et al., 2018 |
Papio hamadryas |
|
|
|
|
|
|
|
SINGAPORE |
EMCV-1 |
orangutan/SG-NParks-M100-02 |
CG(p) |
7629 |
MT499387 |
Wang et al., unpub. |
|
|
|
|
|
|
|
|
SOUTH AFRICA |
EMCV-1 |
mite/AR3595/RSA/61 |
CG(p) |
7447 |
OQ858575 |
van Meer et al., 2024 |
Laelaps muricola |
EMCV-1 |
multimammate mouse/AN7405/RSA/61 |
CG(p) |
7443 |
OQ858576 |
van Meer et al., 2024 |
Mastomys sp. |
EMCV-1 |
multimammate mouse/AN7402/RSA/61 |
CG(p) |
7439 |
OQ858577 |
van Meer et al., 2024 |
Mastomys sp. |
EMCV-1 |
pig/SAR/1/79 |
5'UTR(p)+L+P1 |
3371 |
JN800421 |
van Sandwyk et al., 2013 |
Sus scrofa |
3D(p) |
246 |
JX102656 |
van Sandwyk et al., 2013 |
EMCV-1 |
African elephant/KNP/17/94 (aka
SPU17/94) |
5'UTR(p)+L+P1 |
3371 |
JN800422 |
van Sandwyk et al., 2013 |
Loxodonta africana |
3D(p) |
246 |
JX102657 |
van Sandwyk et al., 2013 |
CG(p) |
7398 |
OR924201 |
van Meer et al.,
2024 |
EMCV-1 |
African elephant/KNP/19/94 (aka
SPU19/94) |
5'UTR(p)+L+P1 |
3371 |
JN800423 |
van Sandwyk et al., 2013 |
Loxodonta africana |
3D(p) |
246 |
JX102658 |
van Sandwyk et al., 2013 |
CG(p) |
7398 |
OR924200 |
van Meer et al., 2024 |
|
|
|
|
|
|
|
UGANDA |
EMCV-1 |
Mengo UR22-M ? (Rhesus monkey) |
CG |
7761 |
L22089 |
Palmenberg & Duke, unpub. |
rhesus monkey/Uganda/46 |
EMCV-1 |
Mengo (medium plaque - Rz-pMwt) |
CG |
7765 |
DQ294633 |
Fata-Hartley and Palmenberg, 2005 |
|
EMCV-1 |
Mengo 37A (Rhesus monkey) |
P1 |
2792 |
M88547 |
Mann et al., 1992 |
|
EMCV-1 |
Mengo (Rhesus monkey) |
3D(p) |
230 |
AJ235698 |
Koenen et al., 1999 |
|
|
|
|
|
|
|
|
UNITED
KINGDOM |
|
|
|
|
|
|
|
USA |
EMCV-1 |
R (Rueckert) |
L-fragment |
7200 |
X00463 |
Palmenberg et al., 1984 |
|
CG |
7835 |
M81861 |
Duke et al., 1992 |
|
EMCV-1 |
chimpanzee/ATCC
VR-129B
(Florida, 1944) |
CG |
7875 |
KM269482 |
Logan et al., 2014 |
|
VP3(p)+VP1(p) |
245 |
AJ235685 |
Koenen et al., 1999 |
|
3D(p) |
230 |
AJ235699 |
Koenen et al., 1999 |
|
5'UTR |
360 |
AJ617363 |
Denis et al., 2006 |
|
L+P1 |
2703 |
AJ617356 |
Denis et al., 2006 |
|
EMCV-1 |
pig/NVSL-FL (Florida/61) |
VP1(p) |
750 |
X67502 |
Meng et al., unpublished |
|
EMCV-1 |
pig/EMCV-30/87 (aka MN-30) |
CG* |
7678 |
AY296731 |
LaRue et al., 2003 |
*27 nt missing from the
5' end of the genome |
EMCV-1 |
pEC9 |
CG |
7722 |
DQ288856 |
Martin et al., 2000 |
|
EMCV-1 |
hamster/MM/USA/1942 |
CG |
7773 |
KP892662 |
Shifflett et al., unpub. |
|
|
|
|
|
|
|
|
ZAMBIA |
EMCV-1 |
ZM12/14/Zambia/2012 |
CG(p) |
7650 |
LC585221 |
Kishimoto et al.,
2021 |
Mastomys
natalensis |
EMCV-1 |
Mpulungu-03/Zambia/2012 |
3D(p) |
277 |
LC585222 |
Kishimoto et al.,
2021 |
Mastomys
natalensis |
EMCV-1 |
Mpulungu-07/Zambia/2012 |
3D(p) |
277 |
LC585223
|
Kishimoto et al.,
2021 |
Mastomys
natalensis |
EMCV-1 |
Mpulungu-49/Zambia/2012 |
3D(p) |
277 |
LC585224
|
Kishimoto et al.,
2021 |
Mastomys
natalensis |
EMCV-1 |
Mpulungu-65/Zambia/2012 |
3D(p) |
277 |
LC585225 |
Kishimoto et al.,
2021 |
Mastomys
natalensis |
EMCV-1 |
Solwezi-03/Zambia/2013 |
3D(p) |
277 |
LC585226 |
Kishimoto et al.,
2021 |
Mastomys
natalensis |
EMCV-1 |
Solwezi-08/Zambia/2013 |
3D(p) |
277 |
LC585227 |
Kishimoto et al.,
2021 |
Mastomys
natalensis |
EMCV-1 |
Solwezi-11/Zambia/2013 |
3D(p) |
277 |
LC585228 |
Kishimoto et al.,
2021 |
Mastomys
natalensis |
EMCV-1 |
Solwezi-12/Zambia/2013 |
3D(p) |
277 |
LC585229
|
Kishimoto et al.,
2021 |
Mastomys
natalensis |
EMCV-1 |
Solwezi-13/Zambia/2013 |
3D(p) |
277 |
LC585230 |
Kishimoto et al.,
2021 |
Mastomys
natalensis |
EMCV-1 |
Solwezi-16/Zambia/2013 |
3D(p) |
277 |
LC585231 |
Kishimoto et al.,
2021 |
Mastomys
natalensis |
EMCV-1 |
Solwezi-20/Zambia/2013 |
3D(p) |
277 |
LC585232
|
Kishimoto et al.,
2021 |
Mastomys
natalensis |
EMCV-1 |
Solwezi-21/Zambia/2013 |
3D(p) |
277 |
LC585233
|
Kishimoto et al.,
2021 |
Mastomys
natalensis |
EMCV-1 |
Solwezi-22/Zambia/2013 |
3D(p) |
277 |
LC585234
|
Kishimoto et al.,
2021 |
Mastomys
natalensis |
EMCV-1 |
Solwezi-23/Zambia/2013 |
3D(p) |
277 |
LC585235 |
Kishimoto et al.,
2021 |
Mastomys
natalensis |
EMCV-1 |
Solwezi-24/Zambia/2013 |
3D(p) |
277 |
LC585236 |
Kishimoto et al.,
2021 |
Mastomys
natalensis |
EMCV-1 |
Solwezi-25/Zambia/2013 |
3D(p) |
277 |
LC585237 |
Kishimoto et al.,
2021 |
Mastomys
natalensis |
EMCV-1 |
Solwezi-26/Zambia/2013 |
3D(p) |
277 |
LC585238
|
Kishimoto et al.,
2021 |
Mastomys
natalensis |
EMCV-1 |
Solwezi-27/Zambia/2013 |
3D(p) |
277 |
LC585239
|
Kishimoto et al.,
2021 |
Mastomys
natalensis |
EMCV-1 |
Solwezi-39/Zambia/2013 |
3D(p) |
277 |
LC585240 |
Kishimoto et al.,
2021 |
Mastomys
natalensis |
|
|
|
|
|
|
|
Unknown origin |
EMCV-1 |
'Russian' |
S-frag |
149 |
K01410 |
Vartapetian et al., 1983 |
|
2C-3'UTR |
2988 |
M54935 |
Petrov et al., 1984 |
|
3D(p)+3'UTR |
564 |
M38329 |
Grachev et al.,
1983 |
|
EMCV-1 |
? |
3'UTR |
129 |
M24883 |
Porter et al.,
1978 |
|
EMCV-1 |
? |
3'UTR |
171 |
V01129 |
Zimmern and Kaesberg,
1978 |
|
EMCV-1 |
? |
3D(p)+3'UTR |
420 |
J02082 |
Drake et al., 1982 |
|
EMCV-1 |
BCCO_50_0517 |
CG(p) |
7495 |
PP841942 |
Honig et al., unpub. |
|
|
|
|
|
|
|
|
|
GERMANY |
EMCV-2 |
mouse/RD 1338
(D28/05) (Germany, 2005) |
CG(p) |
7606 |
JX257003 |
Philipps
et al., 2012 |
Apodemus sylvaticus |
|
|
|
|
|
|
|
SINGAPORE |
EMCV-2 |
agouti/SG-G15150-19/Singapore/2019 |
CG(p) |
7706 |
MN547968 |
Wang et al.,
unpub. |
Agouti |
|
|
|
|
|
|
|
THAILAND |
EMCV-2 |
rat/RtBi-PicV/Tc2011/Thailand/2011 |
PG |
5287 |
MT085334 |
Wu et al., 2020 |
Bandicota
indica |
|
|
|
|
|
|
|
UNITED KINGDOM |
EMCV-2 |
dormouse/UK2016 |
CG(p) |
7608 |
OP381184 |
Shadbolt et al.,
unpub. |
Muscardinus avellanarius
(hazel dormouse) |
|
|
|
|
|
|
|
|
SINGAPORE |
EMCV-3 |
orangutan/Sing-M100/1/02 |
CG(p) |
7630 |
KC310737 |
Yeo et al., 2013 |
~200 nt missing from 5' end |
VP1(p) |
806 |
AY162280 |
Yeo et al., 2013 |
|
3D(p) |
190 |
AY162279 |
Yeo et al., 2013 |
|
EMCV-3 |
orangutan/Sing-M105/1/02 |
CG(p) |
7634 |
KC310738 |
Yeo et al., 2013 |
~200 nt missing from 5' end |
VP1(p) |
759 |
AF525466 |
Yeo et al., 2013 |
|
3D(p) |
234 |
AF510055 |
Yeo et al., 2013 |
|
|
|
|
|
|
|
|
|
VIETNAM |
EMCV-4 |
rat/83GR-70-RAT044/VIT/2012 |
VP1(p) |
822 |
KT944132 |
Nguyen et al., unpub. |
Bandicota
indica |
EMCV-4 |
rat/83GR-70-RAT094/VIT/2012 |
VP1(p) |
822 |
KT944133 |
Nguyen et al., unpub. |
Rattus
argentiventer |
EMCV-4 |
rat/83GR-70-RAT141/VIT/2012 |
VP1(p) |
638 |
KT944134 |
Nguyen et al., unpub. |
Rattus
argentiventer |
EMCV-4 |
rat/22084x5-1820/VIT/2014 |
CG(p) |
7607 |
MZ544193 |
JL Ashworth, unpub. |
Rattus
argentiventer |
EMCV-4 |
rat/22084x8-300/VIT/2014 |
CG(p) |
7590 |
MZ544194 |
JL Ashworth, unpub. |
Rattus
argentiventer |
|
|
|
|
|
|
|
|
CHINA |
EMCV-5 |
WZ_Ra.losea_picorna_1/Wenzhou/China |
CG(p) |
6981 |
OQ715973 |
Chen et al., 2023 |
Rattus losea |
? |
WZ_Ra.norvegicus_picorna_1/Wenzhou/China |
P2/P3(p) |
2552 |
OQ715974 |
Chen et al., 2023 |
Rattus norvegicus |
|
|
|
|
|
|
|
|
EMCV-? |
bat/KEL367/Madagascar/2019 |
2B(p)-3'UTR |
3605 |
PP766467 |
Kettenburg,
G., unpub. |
Eidolon dupreanum |
|
|
|
|
|
|
|
CG = complete genome
(p) = partial gene sequence |
Amineva S.P., Aminev A.G., Andreev V.G., Orljankin B.G., Gusev A.A. Diagnostic porcine
encephalomyocarditis virus by nested polymerase chain reaction. Unpublished.
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Backhans, A., Jacobson, M., Hansson, I., Lebbad, M.,
Lambertz, S.T., Gammelgĺrd, E., Saager, M., Akande, O. and Fellström, C.
(2012). Occurrence of pathogens in wild rodents caught on Swedish pig
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Bae, Y.S., Eun, H.M. and Yoon, J.W. (1989). Genomic differences between diabetogenic
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Phe-16 and Ala776 on the polyprotein are most likely responsible for diabetogenicity of
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Bai, J., Jiang, K., Zeshan, B., Wang,
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Cardeti, G., Mariano, V., Eleni, C., Aloisi, M.,
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Cersini, A. and Nardi, A. (2016). Encephalomyocarditis virus infection
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Yao, H. and Wang, C. (2014). Complete genome sequence of porcine
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R.S., Knowles, N.J. and Koenen, F. (2006). Genetic variability of
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Diallo, I.S., Carter, P.D. and Storie, G. (2013).
Encephalomyocarditis virus infection in a splenectomised calf. Aust.
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Doysabas KCC, Oba M, Ishibashi T, Shibata H, Takemae
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