|
Genus: Senacavirus
Species:
Senecavirus valles (formerly
Senecavirus A)
Serotype: Seneca Valley virus
1 (SVV-1) |
|
5' UTR |
L |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
|
|
|
(White areas indicate genes which haven't yet been
sequenced completely;
grey areas are where only partial sequences exist)
Virus |
Strain |
Region
|
Length
|
Accession No.
|
Reference |
Comments |
Seneca Valley virus 1 (SVV-1)
|
Brazil |
SVV-1 |
sw/BRA/MG1/2015 |
CG(p) |
7270 |
KR063107 |
Vannucci et al., 2015 |
|
SVV-1 |
sw/BRA/MG2/2015 |
CG(p) |
7270 |
KR063108 |
Vannucci et al., 2015 |
|
SVV-1 |
sw/BRA/GO3/2015 |
CG(p) |
7270 |
KR063109 |
Vannucci et al., 2015 |
|
SVV-1 |
sw/BRA/UEL-SVV-A1/15 |
VP3(p)+VP1(p) |
541 |
KR075677 |
Leme et al., 2015 |
|
SVV-1 |
sw/BRA/UEL-SVV-B2/15 |
VP3(p)+VP1(p) |
541 |
KR075678 |
Leme et al., 2015 |
|
SVV-1 |
sw/LV01-MG-2015/Brazil |
VP1(p) |
531 |
KT007134 |
Laguardia-Nascimento et al.,
2016 |
|
SVV-1 |
sw/EP02-MG-2015/Brazil |
VP1(p) |
531 |
KT007135 |
Laguardia-Nascimento et al.,
2016 |
|
SVV-1 |
sw/EP01-GO-2015/Brazil |
VP1(p) |
531 |
KT007136 |
Laguardia-Nascimento et al.,
2016 |
|
SVV-1 |
sw/EP02-GO-2015/Brazil |
VP1(p) |
531 |
KT007137 |
Laguardia-Nascimento et al.,
2016 |
|
SVV-1 |
sw/EP03-GO-2015/Brazil |
VP1(p) |
531 |
KT007138 |
Laguardia-Nascimento et al.,
2016 |
|
SVV-1 |
sw/EP04-GO-2015/Brazil |
VP1(p) |
531 |
KT007139 |
Laguardia-Nascimento et al.,
2016 |
|
SVV-1 |
sw/EP01-RS-2015/Brazil |
VP1(p) |
531 |
KT007140 |
Laguardia-Nascimento et al.,
2016 |
|
SVV-1 |
sw/EP02-RS-2015/Brazil |
VP1(p) |
531 |
KT007141 |
Laguardia-Nascimento et al.,
2016 |
|
SVV-1 |
sw/BRA/UEL-SenV-A2/15 |
VP3(p)+VP1(p) |
541 |
KT445973 |
Leme et al., unpub. |
|
SVV-1 |
sw/BRA/UEL-SenV-B4/15 |
VP3(p)+VP1(p) |
541 |
KT445974 |
Leme et al., unpub. |
|
SVV-1 |
sw/BRA/UEL-SenV-C5/15 |
VP3(p)+VP1(p) |
541 |
KT445975 |
Leme et al., unpub. |
|
SVV-1 |
sw/BRA/UEL-SenV-D6/15 |
VP3(p)+VP1(p) |
541 |
KT445976 |
Leme et al., unpub. |
|
SVV-1 |
sw/BRA/UEL-SenV-E10/15 |
VP3(p)+VP1(p) |
541 |
KT445977 |
Leme et al., unpub. |
|
SVV-1 |
sw/BRA/UEL-SenV-MS-1/2015 |
VP1(p) |
315 |
KX712387 |
Feronato
et al., unpub. |
|
SVV-1 |
sw/BRA/UEL-SenV-PR-1/2015 |
VP1(p) |
315 |
KX712388 |
Feronato
et al., unpub. |
|
SVV-1 |
sw/BRA/UEL-SenV-PR-2/2015 |
VP1(p) |
315 |
KX712389 |
Feronato
et al., unpub. |
|
SVV-1 |
sw/BRA/UEL-SenV-PR-3/2015 |
VP1(p) |
315 |
KX712390 |
Feronato
et al., unpub. |
|
SVV-1 |
sw/BRA/UEL-SenV-PR-4/2015 |
VP1(p) |
315 |
KX712391 |
Feronato
et al., unpub. |
|
SVV-1 |
sw/BRA/UEL-SenV-SC-1/2015 |
VP1(p) |
315 |
KX712392 |
Feronato
et al., unpub. |
|
SVV-1 |
sw/BRA/UEL-SenV-SC-2/2015 |
VP1(p) |
315 |
KX712393 |
Feronato
et al., unpub. |
|
SVV-1 |
sw/BRA/UEL-SenV-SC-3/2015 |
VP1(p) |
315 |
KX712394 |
Feronato
et al., unpub. |
|
SVV-1 |
sw/BRA/UEL-SenV-SC-4/2015 |
VP1(p) |
315 |
KX712395 |
Feronato
et al., unpub. |
|
SVV-1 |
sw/BRA/UEL-SenV-SC-5/2015 |
VP1(p) |
315 |
KX712396 |
Feronato
et al., unpub. |
|
SVV-1 |
sw/BRA/UEL-SenV-SC-6/2015 |
VP1(p) |
315 |
KX712397 |
Feronato
et al., unpub. |
|
SVV-1 |
sw/BRA/UEL-SenV-SC-7/2015 |
VP1(p) |
315 |
KX712398 |
Feronato
et al., unpub. |
|
SVV-1 |
sw/BRA/UEL-SenV-SC-8/2015 |
VP1(p) |
315 |
KX712399 |
Feronato
et al., unpub. |
|
SVV-1 |
sw/BRA/UEL-SenV-SC-9/2015 |
VP1(p) |
315 |
KX712400 |
Feronato
et al., unpub. |
|
SVV-1 |
sw/BRA/UEL-SenV-SP-1/2015 |
VP1(p) |
315 |
KX712401 |
Feronato
et al., unpub. |
|
SVV-1 |
sw/BRA/UEL-SenV-SP-2/2015 |
VP1(p) |
315 |
KX712402 |
Feronato
et al., unpub. |
|
SVV-1 |
sw/011_15/SC/BRA/2015
|
CG(p) |
7184 |
MF615501 |
Joshi et al., 2020 |
|
SVV-1 |
sw/072_16/SC/BRA/2016 |
CG(p) |
7063 |
MF615502 |
Joshi et al., 2020 |
|
SVV-1 |
sw/075_16/SC/BRA/2016 |
CG(p) |
7147 |
MF615503 |
Joshi et al., 2020 |
|
SVV-1 |
sw/077_16/SC/BRA/2016 |
CG(p) |
7108 |
MF615504 |
Joshi et al., 2020 |
|
SVV-1 |
sw/078_16/SC/BRA/2016 |
CG(p) |
7158 |
MF615505 |
Joshi et al., 2020 |
|
SVV-1 |
sw/128_15/SC/BRA/2015
|
CG(p) |
7184 |
MF615506 |
Joshi et al., 2020 |
|
SVV-1 |
sw/235_15/SC/BRA/2015
|
CG(p) |
7163 |
MF615507 |
Joshi et al., 2020 |
|
SVV-1 |
sw/244_15/SC/BRA/2015
|
CG(p) |
7165 |
MF615508 |
Joshi et al., 2020 |
|
SVV-1 |
sw/245_15/SC/BRA/2015
|
CG(p) |
7153 |
MF615509 |
Joshi et al., 2020 |
|
SVV-1 |
sw/282_15/SC/BRA/2015
|
CG(p) |
7146 |
MF615510 |
Joshi et al., 2020 |
|
SVV-1 |
sw/BRA/UEL-PR-05/15 |
VP1-3D(p) |
2475 |
MH589794 |
Leme
et al.,
unpub. |
|
SVV-1 |
sw/BRA/UEL-SC-11/15 |
VP1-3D(p) |
2475 |
MH589795 |
Leme
et al.,
unpub. |
|
SVV-1 |
sw/BRA/UEL-SC-12/15 |
VP1-3D(p) |
2475 |
MH589796 |
Leme
et al.,
unpub. |
|
SVV-1 |
sw/347_20/BRA/2020 |
CG(p) |
7135 |
MZ456812 |
Gava & Schaefer, unpub. |
|
|
|
|
|
|
|
|
Canada |
SVV-1 |
sw/CAN/07-503297/2007 |
CG(p) |
7304 |
MN233023 |
Joshi et al., 2020 |
|
SVV-1 |
sw/Canada/11-55910-3/2011 |
CG(p) |
7356 |
KC667560 |
Koster and Killian, unpub. |
|
SVV-1 |
CA/CAN2011/2011 |
CG(p) |
7273 |
MT360257 |
Buckley et al., unpub. |
|
SVV-1 |
env/Canada/MB/NCFAD-104-1/2015 |
CG(p) |
7212 |
KY486156 |
Xu
et al., 2017 |
|
SVV-1 |
env/Canada/MB/NCFAD-104-6/2015 |
CG(p) |
7212 |
KY486157 |
Xu
et al., 2017 |
|
SVV-1 |
env/Canada/MB/NCFAD-104-9/2015 |
CG(p) |
7212 |
KY486158 |
Xu
et al., 2017 |
|
SVV-1 |
env/Canada/MB/NCFAD-108-12/2015 |
CG(p) |
7212 |
KY486159 |
Xu
et al., 2017 |
|
SVV-1 |
env/Canada/MB/NCFAD-108-16/2015 |
CG(p) |
7212 |
KY486160 |
Xu
et al., 2017 |
|
SVV-1 |
env/Canada/MB/NCFAD-108-20/2015 |
CG(p) |
7212 |
KY486161 |
Xu
et al., 2017 |
|
SVV-1 |
env/Canada/MB/NCFAD-119-2/2015 |
CG(p) |
7212 |
KY486162 |
Xu
et al., 2017 |
|
SVV-1 |
env/Canada/MB/NCFAD-119-6/2015 |
CG(p) |
7212 |
KY486163 |
Xu
et al., 2017 |
|
SVV-1 |
env/Canada/MB/NCFAD-119-7/2015 |
CG(p) |
7212 |
KY486164 |
Xu
et al., 2017 |
|
SVV-1 |
sw/Canada/ON/FMA-2015-0024T1/2015 |
CG(p) |
7212 |
KY486165 |
Xu
et al., 2017 |
|
SVV-1 |
sw/Canada/ON/FMA-2015-0024T2/2015 |
CG(p) |
7212 |
KY486166 |
Xu
et al., 2017 |
|
|
|
|
|
|
|
|
Chile |
SVV-1 |
sw/Chile/BBL00/2022 |
CG(p) |
7190 |
ON843710 |
Bennett et al., 2022 |
|
|
|
|
|
|
|
|
China,
People's Republic of |
SVV-1 |
sw/CH-01-2015 |
CG |
7286 |
KT321458 |
Wu et al., 2016 |
|
SVV-1 |
sw/HB-CH-2016 |
CG |
7300 |
KX377924 |
Qian et al., 2016 |
|
SVV-1 |
sw/CH-02-2015 |
CG |
7286 |
KX173339 |
Zhao et al., 2017 |
|
SVV-1 |
sw/CH-03-2015 |
CG |
7286 |
KX173338 |
Zhao et al., unpub. |
|
SVV-1 |
sw/CH-04-2015 |
CG |
7286 |
KX173340 |
Zhao et al., 2017 |
|
SVV-1 |
sw/CH-DB-11-2015 |
CG |
7287 |
KX751943 |
Zhao et al.,
2017 |
|
SVV-1 |
sw/CH-DL-01-2016 |
CG |
7303 |
KX751944 |
Zhao et al.,
2017 |
|
SVV-1 |
sw/CH-LX-01-2016 |
CG |
7286 |
KX751945 |
Zhao et al.,
2017 |
|
SVV-1 |
sw/CH-ZW-01-2016 |
CG |
7287 |
KX751946 |
Zhao et al.,
2017 |
|
SVV-1 |
sw/CH/GXI09/2016 |
CG |
7295 |
KY038016 |
Qian et al., unpub. |
|
SVV-1 |
sw/HLJ/CHA/2016 |
CG |
7283 |
KY419132 |
Wang et al., 2017 |
|
SVV-1 |
sw/CH-FJ-2017 |
CG |
7283 |
KY747510 |
Zhu et al., 2017 |
|
SVV-1 |
sw/CH-HN-2017 |
CG |
7283 |
KY747511 |
Zhu et al., 2017 |
|
SVV-1 |
sw/CH-HNSL-2017 |
CG |
7283 |
KY747512 |
Zhu et al., 2017 |
|
SVV-1 |
sw/CH-FJ2-2017 |
VP1 |
792 |
KY747513 |
Zhu
et al., 2017 |
|
SVV-1 |
sw/CH-FJ3-2017 |
VP1 |
792 |
KY747514 |
Zhu
et al., 2017 |
|
SVV-1 |
sw/CH-FJ15-2017 |
VP1 |
792 |
KY747515 |
Zhu
et al., 2017 |
|
SVV-1 |
sw/CH-HN2-2017 |
VP1 |
792 |
KY747516 |
Zhu
et al., 2017 |
|
SVV-1 |
sw/CH-HN6-2017 |
VP1 |
792 |
KY747517 |
Zhu
et al., 2017 |
|
SVV-1 |
sw/CH-HNSL1-2017 |
VP1 |
792 |
KY747518 |
Zhu
et al., 2017 |
|
SVV-1 |
sw/CH-HNSL2-2017 |
VP1 |
792 |
KY747519 |
Zhu
et al., 2017 |
|
SVV-1 |
sw/CH-GDBL-2016 |
VP1-2A |
983 |
MF077351 |
Yang et al., unpub. |
|
SVV-1 |
sw/CH-GDZJ-2016 |
VP1-2A |
983 |
MF077352 |
Yang
et al., unpub. |
|
SVV-1 |
sw/HN16/CHA/2016 |
CG |
7280 |
MF893200 |
Luo et al., 2017 |
|
SVV-1 |
sw/CH-GDLZ01-2017 |
CG |
7285 |
MG428680 |
Liu et al., 2018 |
|
SVV-1 |
sw/CH-GDLZ02-2017 |
CG |
7285 |
MG428681 |
Liu
et al., 2018 |
|
SVV-1 |
sw/CH-GDQC-2017 |
CG |
7285 |
MG428682 |
Liu
et al., 2018 |
|
SVV-1 |
sw/CH-GDYD-2017 |
CG |
7285 |
MG428683 |
Liu
et al., 2018 |
|
SVV-1 |
sw/CH-GDYS01-2017 |
CG |
7285 |
MG428684 |
Liu
et al., 2018 |
|
SVV-1 |
sw/CH-GDYS02-2017 |
CG |
7284 |
MG428685 |
Liu
et al., 2018 |
|
SVV-1 |
sw/GD/1/2017 |
VP1 |
792 |
MG557660 |
Huang et al., unpub. |
|
SVV-1 |
sw/GD/2/2017 |
VP1 |
792 |
MG557661 |
Huang
et al., unpub. |
|
SVV-1 |
sw/AH01-CH-2016 |
CG |
7296 |
MF460448 |
Chen et al., unpub. |
|
SVV-1 |
sw/AH02-CH-2017 |
CG |
7296 |
MF460449 |
Chen et al., unpub. |
|
SVV-1 |
sw/GD04/2017 (China)
|
CG(p) |
7262 |
MH316113 |
Wang et al., unpub. |
|
SVV-1 |
sw/GD01/2017 (China)
|
CG(p) |
7250 |
MH316114 |
Wang et al., unpub. |
|
SVV-1 |
sw/GD03/2017 (China) |
CG(p) |
7250 |
MH316115 |
Wang et al., unpub. |
|
SVV-1 |
sw/GD05/2017 (China) |
CG(p) |
7251 |
MH316116 |
Wang et al., unpub. |
|
SVV-1 |
sw/GD06/2017 (China) |
CG(p) |
7250 |
MH316117 |
Wang et al., unpub. |
|
SVV-1 |
sw/HeB01-2017 (China) |
CG |
7296 |
MF967574 |
Chen, unpub. |
|
SVV-1 |
sw/CHN/01/2017 |
CG |
7286 |
MG765550 |
Cheng
et al., unpub. |
|
SVV-1 |
sw/CHN/02/2017 |
CG |
7286 |
MG765551 |
Cheng
et al., unpub. |
|
SVV-1 |
sw/CHN/03/2017 |
CG |
7286 |
MG765552 |
Cheng
et al., unpub. |
|
SVV-1 |
sw/CHN/04/2017 |
CG |
7286 |
MG765553 |
Cheng
et al., unpub. |
|
SVV-1 |
sw/CHN/05/2017 |
CG |
7286 |
MG765554 |
Cheng
et al., unpub. |
|
SVV-1 |
sw/CHN/06/2017 |
CG |
7286 |
MG765555 |
Cheng
et al., unpub. |
|
SVV-1 |
sw/CHN/07/2017 |
CG |
7286 |
MG765556 |
Cheng
et al., unpub. |
|
SVV-1 |
sw/CHN/08/2017 |
CG |
7286 |
MG765557 |
Cheng
et al., unpub. |
|
SVV-1 |
sw/CHN/09/2017 |
CG |
7286 |
MG765558 |
Cheng
et al., unpub. |
|
SVV-1 |
sw/CHN/10/2017 |
CG |
7286 |
MG765559 |
Cheng
et al., unpub. |
|
SVV-1 |
sw/CHN/11/2017 |
CG |
7286 |
MG765560 |
Cheng
et al., unpub. |
|
SVV-1 |
sw/CHN/12/2017 |
CG |
7286 |
MG765561 |
Cheng
et al.,
unpub. |
|
SVV-1 |
sw/CHN/13/2017 |
CG |
7286 |
MG765562 |
Cheng
et al., unpub. |
|
SVV-1 |
sw/CHN/14/2017 |
CG |
7292 |
MG765563 |
Cheng
et al., unpub. |
|
SVV-1 |
sw/CHN/15/2017 |
CG |
7286 |
MG765564 |
Cheng
et al., unpub. |
|
SVV-1 |
sw/CHN/16/2017 |
CG |
7286 |
MG765565 |
Cheng
et al., unpub. |
|
SVV-1 |
sw/CHN/17/2017 |
CG |
7286 |
MG765566 |
Cheng
et al., unpub. |
|
SVV-1 |
CHhb17 |
CG |
7280 |
MG983756 |
D. Juanguo & H. Lei, unpub. |
|
SVV-1 |
sw/CH-GD-2017-1 |
CG |
7285 |
MF189000 |
Chen et al., 2018 |
|
SVV-1 |
sw/CH-GD-2017-2 |
CG |
7284 |
MF189001 |
Chen
et al., 2018 |
|
SVV-1 |
sw/CH/FuJ/2017 |
CG |
7286 |
MH490944 |
Liu et al., 2019. |
|
SVV-1 |
sw/SD01/2018 |
3D(p) |
1291 |
MH885099 |
Zhang et al., 2018 |
|
SVV-1 |
sw/SD02/2018 |
3D(p) |
1296 |
MH885100 |
Zhang et al., 2018 |
|
SVV-1 |
sw/GXT/92/2018 |
CG |
7280 |
MK256736 |
Zhang et al., 2019 |
|
SVV-1 |
sw/GD-S5/2018 |
CG(p) |
7250 |
MK463618 |
Chen et al., unpub. |
|
SVV-1 |
sw/GD-S4/2018 |
CG(p) |
7250 |
MK463619 |
Chen et al., unpub. |
|
SVV-1 |
sw/Sichuan HS-01/China/2018 |
CG(p) |
7290 |
MH588717 |
Zhuo et al., unpub. |
|
SVV-1 |
sw/SC-01/China/2018 |
CG |
7312 |
MH716015 |
Chen
et al., unpub. |
|
SVV-1 |
sw/CH-SD/China/2018 |
CG |
7286 |
MH779611 |
Li
et al., unpub. |
|
SVV-1 |
sw/HS-02/China/2018 |
CG(p) |
7290 |
MH817445 |
Zhuo
et al.,
unpub. |
|
SVV-1 |
sw/HS-03/China/2018 |
CG(p) |
7290 |
MH817446 |
Zhuo & Zhuo,
unpub. |
|
SVV-1 |
sw/GX/CH/2018 |
CG |
7286 |
MK039162 |
Wang & Niu , unpub. |
|
SVV-1 |
bo/GD/China/2018 |
CG |
7279 |
MK252002 |
Liang et al., unpub. |
Bos taurus (cattle) |
SVV-1 |
sw/CH-GDFS-2018 |
CG(p) |
7267 |
MK284514 |
Liu et al., unpub. |
|
SVV-1 |
sw/CH-GDJY-2018 |
CG(p) |
7271 |
MK284515 |
Liu
et al.,
unpub. |
|
SVV-1 |
sw/HeNZMD-1/2018/China |
CG |
7285 |
MK357115 |
Guo, unpub. |
|
SVV-1 |
sw/HeNNY-1/2018/China |
CG |
7285 |
MK357116 |
Guo, unpub. |
|
SVV-1 |
sw/HeNKF-1/2018/China |
CG |
7285 |
MK357117 |
Guo, unpub. |
|
SVV-1 |
sw/GD-S2/2018/China |
CG(p) |
7250 |
MK802890 |
Chen
et al.,
unpub. |
|
SVV-1 |
sw/GD-S3/2018/China |
CG(p) |
7250 |
MK802891 |
Chen
et al.,
unpub. |
|
SVV-1 |
sw/GD-S1/2018/China |
CG(p) |
7250 |
MK802892 |
Chen
et al.,
unpub. |
|
SVV-1 |
sw/SDta/2018 |
CG |
7281 |
MN433300 |
Zhang et al., unpub. |
|
SVV-1 |
ICR-F10 (mouse-adapted CH/FuJ/2017) |
CG |
7286 |
MN171528 |
Liu
et al., unpub. |
|
SVV-1 |
sw/GDHY/2018/China |
CG |
7278 |
MN017170 |
He et al., unpub. |
|
SVV-1 |
buffalo/GD/China/2018 |
CG |
7276 |
MN615881 |
Zhou et al., unpub. |
buffalo |
SVV-1 |
sw/CH-GDZS-2019/China |
CG(p) |
7267 |
MN887248 |
Liu et al., 2020 |
|
SVV-1 |
sw/CH-GDMZ-2019/China |
CG(p) |
7267 |
MN887249 |
Liu et al., 2020 |
|
SVV-1 |
sw/CH-GDHZ01-2019/China |
CG(p) |
7267 |
MN887250 |
Liu et al., 2020 |
|
SVV-1 |
sw/CH-GDHZ02-2019/China |
CG(p) |
7267 |
MN887251 |
Liu et al., 2020 |
|
SVV-1 |
sw/CH-GDZQ-2018/China |
CG |
7282 |
MN423333 |
Dong et al., unpub. |
|
SVV-1 |
sw/CH-GDZQ-2018-1/China |
CG |
7281 |
MN423334 |
Dong et al., unpub. |
|
SVV-1 |
sw/GX02/2020/China |
CG(p) |
7250 |
MW117126 |
Bao et al., unpub. |
|
SVV-1 |
sw/GX04/2020/China |
CG(p) |
7250 |
MW117127 |
Bao et al., unpub. |
|
SVV-1 |
sw/GX84/2020/China |
CG(p) |
7250 |
MW117128 |
Bao et al., unpub. |
|
SVV-1 |
sw/GX94/2020/China |
CG(p) |
7250 |
MW117129 |
Bao et al., unpub. |
|
SVV-1 |
sw/GDLD2-2019/China |
CG |
7318 |
MW713116 |
Jiang et al., unpub. |
|
SVV-1 |
sw/GDLD1-2019/China |
CG |
7318 |
MW713117 |
Jiang et al., unpub. |
|
SVV-1 |
sw/GD5-2018/China |
CG |
7318 |
MW713118 |
Jiang et al., unpub. |
|
SVV-1 |
sw/GDYF7-2019/China |
CG |
7319 |
MW713119 |
Jiang et al., unpub. |
|
SVV-1 |
sw/GDSZ-2018/China |
CG |
7318 |
MW713120 |
Jiang et al., unpub. |
|
SVV-1 |
sw/GDLD6-2019/China |
CG |
7318 |
MW713121 |
Jiang et al., unpub. |
|
SVV-1 |
sw/GDLD4-2019/China |
CG |
7318 |
MW713122 |
Jiang et al., unpub. |
|
SVV-1 |
sw/GDSG8-2019/China |
CG |
7318 |
MW713123 |
Jiang et al., unpub. |
|
SVV-1 |
sw/CH-JX-JJ012 |
PPCR |
6546 |
MT656572 |
Shan, unpub. |
|
SVV-1 |
sw/CH-ZJ-JH12 |
PPCR |
6546 |
MT656573 |
Shan, unpub. |
|
SVV-1 |
sw/CH-JX-NC204 |
PPCR |
6546 |
MT656574 |
Shan, unpub. |
|
SVV-1 |
sw/CH-ZJ-LS03 |
PPCR |
6546 |
MT656575 |
Shan, unpub. |
|
SVV-1 |
sw/CH-HuN-YZH32 |
PPCR |
6546 |
MT656576 |
Shan, unpub. |
|
SVV-1 |
sw/CH-GD-FS21 |
PPCR |
6546 |
MT656577 |
Shan, unpub. |
|
SVV-1 |
sw/CH-LN-FX2312 |
PPCR |
6546 |
MT656578 |
Shan, unpub. |
|
SVV-1 |
sw/CH-HB-BD1023 |
PPCR |
6546 |
MT656579 |
Shan, unpub. |
|
SVV-1 |
sw/CH-HB-XT64 |
PPCR |
6546 |
MT656580 |
Shan, unpub. |
|
SVV-1 |
sw/CH-SD-WF328 |
PPCR |
6546 |
MT656581 |
Shan, unpub. |
|
SVV-1 |
sw/CH-JS-YC58 |
PPCR |
6546 |
MT656582 |
Shan, unpub. |
|
SVV-1 |
sw/CH-HuB-XG7 |
PPCR |
6546 |
MT656583 |
Shan, unpub. |
|
SVV-1 |
sw/CH-HNCY-2019 |
CG |
7294 |
MT713137 |
Li et al., unpub. |
|
SVV-1 |
sw/CH/HeB/2019 |
CG |
7317 |
MZ375462 |
Guo et al., 2021 |
|
SVV-1 |
sw/CH-SDGT-2017 |
CG |
7285 |
MZ818785 |
Li et al, unpub. |
|
SVV-1 |
sw/CH-HB-BD/2021 |
VP3(p)-2C(p) |
2610 |
OK040136 |
Liu et al., unpub. |
|
SVV-1 |
sw/CHgx/China/2017 |
CG |
7280 |
ON024061 |
Dong, unpub. |
|
SVV-1 |
sw/CH-AHAU-1 |
CG |
7286 |
OM654411 |
Chen & Li, unpub. |
|
SVV-1 |
sw/China/GD-HZ1/26/3/2020 |
PPCR |
6546 |
ON868368 |
Gao et al., unpub. |
|
SVV-1 |
sw/China/GD-HZ2/26/3/2020 |
PPCR |
6546 |
ON868369 |
Gao et al., unpub. |
|
SVV-1 |
sw/China/GD-SG3/2/9/2020 |
PPCR |
6546 |
ON868370 |
Gao et al., unpub. |
|
SVV-1 |
sw/China/GD-SG5/2/9/2020 |
PPCR |
6546 |
ON868371 |
Gao et al., unpub. |
|
SVV-1 |
sw/China/GD-ZQ/1/4/2020 |
PPCR |
6546 |
ON868372 |
Gao et al., unpub. |
|
SVV-1 |
sw/China/HeN/09/2018 |
PPCR |
6546 |
ON868373 |
Gao et al., unpub. |
|
SVV-1 |
sw/China/GD-SG1/27/3/2020 |
PPCR |
6546 |
ON868374 |
Gao et al., unpub. |
|
SVV-1 |
sw/China/GD-SG2/27/3/2020 |
PPCR |
6546 |
ON868375 |
Gao et al., unpub. |
|
SVV-1 |
sw/China/GD/10/12/21 |
PPCR |
6546 |
ON868376 |
Gao et al., unpub. |
|
SVV-1 |
sw/China/GD-GZ/09/12/21 |
PPCR |
6546 |
ON868377 |
Gao et al., unpub. |
|
SVV-1 |
sw/CH-CQ/2020 |
CG(p) |
6914 |
OP696593 |
Liu et al., unpub. |
|
SVV-1 |
sw/CH/JL/2022 |
CG(p) |
7278 |
OP562896 |
Lan et al., unpub. |
|
SVV-1 |
sw/CH-SDFX-2022 |
CG |
7282 |
OP714192 |
Ma et al., unpub. |
|
SVV-1 |
sw/CH-GD-2018 |
CG |
7264 |
OQ162219 |
Zeng & Yan, unpub. |
|
SVV-1 |
sw/SX2020/China |
CG |
7280 |
OR703632 |
Lin et al., unpub. |
|
|
|
|
|
|
|
|
Colombia |
SVV-1 |
sw/COL/CO-01/2016 |
CG(p) |
7255 |
KX857728 |
Sun et al.,
2017 |
|
|
|
|
|
|
|
|
India |
SVV-1 |
sw/IND/2019/01/SVA (Haryana) |
PPCR |
6546 |
MZ395819 |
Maan et al., 2022 |
|
|
|
|
|
|
|
|
Mexico |
SVV-1 |
sw/CPA-21748-21/MEX/2021 |
CG(p) |
7267 |
ON369393 |
Navarro-Lopez
et al., unpub. |
|
SVV-1 |
sw/CPA-21738-21/MEX/2021 |
VP3(p)-3D |
6071 |
ON369394 |
Navarro-Lopez
et al., unpub. |
|
|
|
|
|
|
|
|
Thailand |
SVV-1 |
sw/G103_SV_1/2016/Thailand |
CG |
7292 |
KY368743 |
Saeng-Chuto et al.,
2018a |
|
SVV-1 |
sw/G103_SV_2/2016/Thailand |
CG |
7292 |
KY368744 |
Saeng-Chuto
et al., 2018a |
|
SVV-1 |
sw/G27_SV_1/2016/Thailand |
CG |
7282 |
MF416217 |
Saeng-Chuto
et al., 2018b |
|
SVV-1 |
sw/G27_SV_2/2016/Thailand |
CG |
7282 |
MF416218 |
Saeng-Chuto
et al., 2018b |
|
SVV-1 |
sw/G137_SV_1/2017/Thailand |
CG |
7282 |
MF416219 |
Saeng-Chuto
et al., 2018b |
|
SVV-1 |
sw/G137_SV_2/2017/Thailand |
CG |
7282 |
MF416220 |
Saeng-Chuto
et al., 2018b |
|
|
|
|
|
|
|
|
United
States of America |
SVV-1 |
sw/USA/NC88-23626/1988 |
VP3(p)+VP1+2A(p) |
936 |
EU271759 |
Hales et al., unpub. |
|
3D(p)+3'UTR |
460 |
EU271766 |
Hales et al., unpub. |
|
CG(p) |
7303 |
MN233026 |
Joshi et al., 2020 |
|
CG(p) |
7247 |
MN812936 |
Knowles et al., unpub. |
|
SVV-1 |
sw/USA/MN88-36695/1988 |
VP3(p)+VP1+2A(p) |
936 |
EU271760 |
Hales et al., unpub. |
|
3D(p)+3'UTR |
460 |
EU271767 |
Hales et al., unpub. |
|
CG(p) |
7304 |
MN233027 |
Joshi et al., 2020 |
|
CG(p) |
7286 |
MN812937 |
Knowles et al., unpub. |
|
SVV-1 |
sw/USA/IA89-47552/1989 |
VP2(p)+VP3+VP1+2A(p) |
1560 |
EU271757 |
Hales et al., unpub. |
incorrectly labelled
89-47752 |
2C(p) |
425 |
EU271764 |
Hales et al., unpub. |
incorrectly labelled
89-47752 |
3D(p)+3'UTR |
460 |
EU271768 |
Hales et al., unpub. |
incorrectly labelled
89-47752 |
CG(p) |
7247 |
MN233028 |
Joshi et al., 2020 |
|
CG(p) |
7244 |
MN812938 |
Knowles et al., unpub. |
|
SVV-1 |
sw/USA/NJ90-10324/1989 |
VP3(p)+VP1+2A(p) |
936 |
EU271761 |
Hales et al., unpub. |
|
3D(p)+3'UTR |
460 |
EU271769 |
Hales et al., unpub. |
|
CG(p) |
7257 |
MN233029 |
Joshi et al., 2020 |
|
CG |
7291 |
MN812939 |
Knowles et al., unpub. |
|
SVV-1 |
sw/USA/IA90-23664/1990 |
CG(p) |
7302 |
MN233030 |
Joshi et al., 2020 |
|
SVV-1 |
sw/USA/IL92-48963/1992 |
VP3(p)+VP1+2A(p) |
936 |
EU271762 |
Hales et al., unpub. |
|
3D(p)+3'UTR |
460 |
EU271770 |
Hales et al., unpub. |
|
CG(p) |
7277 |
MN233031 |
Joshi et al., 2020 |
|
CG |
7290 |
MN812940 |
Knowles et al., unpub. |
|
SVV-1 |
sw/USA/IL94-9356/1993 |
CG(p) |
7259 |
MN233032 |
Joshi et al., 2020 |
|
SVV-1 |
sw/USA/LA97-98061/1997
(aka 1278) |
VP3(p)+VP1+2A(p) |
936 |
EU271763 |
Hales et al., unpub. |
|
3D(p)+3'UTR |
460 |
EU271771 |
Hales et al., unpub. |
|
CG(p) |
7275 |
MN233034 |
Joshi et al., 2020 |
|
CG(p) |
7326 |
MN812941 |
Knowles et al., unpub. |
|
SVV-1 |
sw/USA/MN99-29256/1999 |
CG(p) |
7305 |
MN233033 |
Joshi et al., 2020 |
|
SVV-1 |
cc/USA/SVV-001* |
CG |
7310 |
DQ641257 |
Knowles & Hallenbeck, 2005;
Hales et al., 2008 |
|
SVV-1 |
ATCC PTA-5343 (probably SVV-001) |
CG(p) |
7264 |
KU954086 |
Zhang et al., unpub. |
|
SVV-1 |
sw/USA/IL00-66289/2000 |
CG(p) |
7306 |
MN233017 |
Joshi et al., 2020 |
|
SVV-1 |
sw/USA/CA01-131395/2001 |
VP2(p)+VP3+VP1+2A(p) |
1560 |
EU271758 |
Hales et al., unpub. |
|
2C(p) |
425 |
EU271765 |
Hales et al., unpub. |
|
3D(p)+3'UTR |
460 |
EU271772 |
Hales et al., unpub. |
|
CG(p) |
7278 |
MN233018 |
Joshi et al., 2020 |
|
CG(p) |
7291 |
MN812942 |
Knowles et al., unpub. |
|
SVV-1 |
sw/USA/IL01-84124/2001 |
CG(p) |
7308 |
MN233019 |
Joshi et al., 2020 |
|
SVV-1 |
US/SVV-001-P3/2002 |
CG |
7280 |
MT360258 |
Buckley et al., unpub. |
|
SVV-1 |
sw/USA/SC05-363649/2005 |
CG(p) |
7305 |
MN233020 |
Joshi et al., 2020 |
|
SVV-1 |
sw/USA/IA05-401302/2005 |
CG(p) |
7302 |
MN233021 |
Joshi et al., 2020 |
|
SVV-1 |
sw/USA/TN06-429971/2006 |
CG(p) |
7302 |
MN233022 |
Joshi et al., 2020 |
|
SVV-1 |
sw/USA/TN06-00310/2006 |
CG(p) |
7297 |
MN812943 |
Knowles et al., unpub. |
|
SVV-1 |
sw/USA/MN07-00487/2007 |
CG(p) |
7312 |
MN812944 |
Knowles et al., unpub. |
|
SVV-1 |
sw/USA/MN07-00488/2007 |
CG(p) |
7322 |
MN812945 |
Knowles et al., unpub. |
|
SVV-1 |
sw/USA/IA09-034037/2009 |
CG(p) |
7297 |
MN812946 |
Knowles et al., unpub. |
|
SVV-1 |
US-HI/NADC40/2012 |
CG |
7281 |
MT360259 |
Buckley et al., unpub. |
|
SVV-1 |
sw/USA/HI13-007758/2013 |
CG |
7297 |
MN812947 |
Knowles et al., unpub. |
|
SVV-1 |
sw/USA/HI13-019514/2013 |
CG(p) |
7297 |
MN812948 |
Knowles et al., unpub. |
|
SVV-1 |
sw/SVA-715/USA/2014 |
CG |
7312 |
KY172968 |
Clampitt et al., unpub. |
source=trypsin |
SVV-1 |
sw/USA/IA40380/2015 |
CG(p) |
7266 |
KT757280 |
Zhang et al., 2015 |
|
SVV-1 |
sw/USA/SD41901/2015 |
CG(p) |
7266 |
KT757281 |
Zhang et al., 2015 |
|
SVV-1 |
sw/USA/IA46008/2015 |
CG(p) |
7266 |
KT757282 |
Zhang et al., 2015 |
|
SVV-1 |
env/MN15-84-4
|
CG(p) |
7174 |
KU359210 |
Joshi et al., 2016a |
|
SVV-1 |
mo/MN15-84-8 |
CG(p) |
7174 |
KU359211 |
Joshi et al., 2016a |
|
SVV-1 |
env/MN15-84-21 |
CG(p) |
7174 |
KU359212 |
Joshi et al., 2016a |
|
SVV-1 |
sw/MN15-84-22 |
CG(p) |
7174 |
KU359213 |
Joshi et al., 2016a |
|
SVV-1 |
mo/MN15-308-M3 |
CG(p) |
7174 |
KU359214 |
Joshi et al., 2016a |
|
SVV-1 |
sw/USA/GBI25/2015 (NC) |
CG(p) |
6795 |
KT827249 |
Hause et al., 2016 |
|
SVV-1 |
sw/USA/GBI26/2015
(NC) |
CG(p) |
7113 |
KT827250 |
Hause
et al., 2016 |
|
SVV-1 |
sw/USA/GBI29/2015 (NC) |
CG(p) |
7215 |
KT827251 |
Hause et al., 2016 |
|
SVV-1 |
sw/USA/GBI30/2015 (NC) |
CG(p) |
6984 |
KT827252 |
Hause et al., 2016 |
|
SVV-1 |
sw/USA/GBI49/2015 (NC) |
CG(p) |
7035 |
KT827253 |
Hause et al., 2016 |
|
SVV-1 |
sw/SVA15-39812IA |
CG(p) |
7234 |
KU051391 |
Guo et al., 2016 |
|
SVV-1 |
sw/SVA15-40380IA |
CG(p) |
7234 |
KU051392 |
Guo et al., 2016 |
|
SVV-1 |
sw/SVA15-40381IA |
CG(p) |
7234 |
KU051393 |
Guo et al., 2016 |
|
SVV-1 |
sw/SVA15-41901SD |
CG(p) |
7234 |
KU051394 |
Guo et al., 2016 |
|
SVV-1 |
sw/OH1 (Ohio/2015) |
CG(p) |
7273 |
KU058182 |
Wang et al., 2016 |
|
SVV-1 |
sw/OH2 (Ohio/2015) |
CG(p) |
7273 |
KU058183 |
Wang et al., 2016 |
|
SVV-1 |
KS15-01 |
CG |
7281 |
KX019804 |
Chen et al., 2016 |
|
SVV-1 |
pKS15-01-Clone |
CG |
7282 |
KX349733 |
Chen et al., 2016 |
|
SVV-1 |
Synthetic construct clone
pKS15-01-EGFP |
CG |
8053 |
KX349734 |
Chen et al., 2016 |
|
SVV-1 |
sw/USA/IN_Purdue_4885/2015 |
CG(p) |
7277 |
KX223836 |
Yingst and
SanMiguel, unpub. |
|
SVV-1 |
sw/SD15-26/USA/2015 |
CG(p) |
7266 |
KX778101 |
Joshi et al., 2016b |
|
SVV-1 |
sw/USA/IA39812/2015_P1 |
CG(p) |
7266 |
KU954087 |
Zhang et al., unpub. |
|
SVV-1 |
sw/USA/IA40381/2015_P1 |
CG(p) |
7266 |
KU954088 |
Zhang et al., unpub. |
|
SVV-1 |
sw/USA/IA44662/2015_P1 |
CG(p) |
7266 |
KU954089 |
Zhang et al., unpub. |
|
SVV-1 |
sw/USA/IA44952/2015_P1 |
CG(p) |
7266 |
KU954090 |
Zhang et al., unpub. |
|
SVV-1 |
sw/USA/IN_Purdue_4914-26/2015 |
CG(p) |
7361 |
KY618834 |
Jung and Yingst, unpub. |
|
SVV-1 |
sw/USA/MO15-029085/2015 |
CG(p) |
7280 |
MN233024 |
Joshi et al., 2020 |
|
SVV-1 |
sw/USA/KS15-031348/2015 |
CG(p) |
7309 |
MN233025 |
Joshi et al., 2020 |
|
SVV-1 |
sw/US/IL/01-8/2015 |
CG(p) |
7266 |
MH634523 |
Joshi et al., 2020 |
|
SVV-1 |
sw/US/IL/01-9/2015 |
CG(p) |
7266 |
MH634524 |
Joshi et al., 2020 |
|
SVV-1 |
sw/US/IL/14-7a/2015 |
CG(p) |
7266 |
MH634525 |
Joshi et al., 2020 |
|
SVV-1 |
sw/US/IL/46-1a/2015 |
CG(p) |
7266 |
MH634526 |
Joshi et al., 2020 |
|
SVV-1 |
sw/US/IL/51-4/2015 |
CG(p) |
7266 |
MH634527 |
Joshi et al., 2020 |
|
SVV-1 |
sw/US/IL/51-6/2015 |
CG(p) |
7266 |
MH634528 |
Joshi et al., 2020 |
|
SVV-1 |
sw/US/IL/51-7/2015 |
CG(p) |
7266 |
MH634529 |
Joshi et al., 2020 |
|
SVV-1 |
sw/US/IL/72-1/2015 |
CG(p) |
7266 |
MH634530 |
Joshi et al., 2020 |
|
SVV-1 |
sw/US/IL/72-2/2015 |
CG(p) |
7266 |
MH634531 |
Joshi et al., 2020 |
|
SVV-1 |
sw/US/IL/72-3/2015 |
CG(p) |
7266 |
MH634532 |
Joshi et al., 2020 |
|
SVV-1 |
sw/US/IL/81-4a/2015 |
CG(p) |
7266 |
MH634533 |
Joshi et al., 2020 |
|
SVV-1 |
sw/US/IL/81-5a/2015 |
CG(p) |
7266 |
MH634534 |
Joshi et al., 2020 |
|
SVV-1 |
sw/USA/MN/004/2015
|
CG(p) |
7273 |
MK333629 |
Joshi et al., 2020 |
|
SVV-1 |
sw/USA/MN/005/2015
|
CG(p) |
7261 |
MK333630 |
Joshi et al., 2020 |
|
SVV-1 |
sw/USA/MN/006/2015
|
CG(p) |
7268 |
MK333631 |
Joshi et al., 2020 |
|
SVV-1 |
sw/USA/MN/007/2015
|
CG(p) |
7276 |
MK333632 |
Joshi et al., 2020 |
|
SVV-1 |
sw/USA/HI15-021004/2015 |
CG(p) |
7298 |
MN812949 |
Knowles et al., unpub. |
|
SVV-1 |
sw/USA/GA15-022479/2015 |
CG(p) |
7312 |
MN812950 |
Knowles et al., unpub. |
|
SVV-1 |
sw/USA/ND15-029655/2015 |
CG(p) |
7299 |
MN812951 |
Knowles et al., unpub. |
|
SVV-1 |
sw/USA/GA15-187/2015 |
CG(p) |
7272 |
MN812952 |
Knowles et al., unpub. |
|
SVV-1 |
sw/USA/MI15-21/2015 |
CG(p) |
7273 |
MN812953 |
Knowles et al., unpub. |
|
SVV-1 |
sw/USA/IL15-229/2015 |
CG(p) |
7261 |
MN812954 |
Knowles et al., unpub. |
|
SVV-1 |
sw/USA/CA15-52/2015 |
CG(p) |
7279 |
MN812955 |
Knowles et al., unpub. |
|
SVV-1 |
sw/USA/IA15-64/2015 |
CG |
7303 |
MN812956 |
Knowles et al., unpub. |
|
SVV-1 |
sw/USA/MI15-7/2015 |
CG(p) |
7254 |
MN812957 |
Knowles et al., unpub. |
|
SVV-1 |
sw/MN_US_2015 |
CG(p) |
7268 |
MN164664 |
Tan et al., unpub. |
|
SVV-1 |
US-IA/IA2015/2015 |
CG |
7281 |
MT360260 |
Buckley et al., unpub. |
|
SVV-1 |
US-NC/NC2015/2015 |
CG |
7281 |
MT360261 |
Buckley et al., unpub. |
|
SVV-1 |
US-SD/SD2015/2015 |
CG |
7281 |
MT360262 |
Buckley et al., unpub. |
|
SVV-1 |
sw/USA/MN/009/2016
|
CG(p) |
7274 |
MK333633 |
Joshi et al., 2020 |
|
SVV-1 |
sw/USA/MN/010/2016
|
CG(p) |
7281 |
MK333634 |
Joshi et al., 2020 |
|
SVV-1 |
sw/USA/MN/011/2016 |
CG(p) |
7278 |
MK333635 |
Joshi et al., 2020 |
|
SVV-1 |
sw/USA/MN/012/2016 |
CG(p) |
7277 |
MK333636 |
Joshi et al., 2020 |
|
SVV-1 |
sw/USA/MN/013/2016 |
CG(p) |
7281 |
MK333637 |
Joshi et
al., 2020 |
|
SVV-1 |
sw/USA/IL_Purdue_43/2016 |
CG(p) |
7281 |
KY618835 |
Jung and Yingst, unpub. |
|
SVV-1 |
sw/USA/IN_Purdue_1581/2016 |
CG(p) |
7337 |
KY618836 |
Jung and Yingst, unpub. |
|
SVV-1 |
sw/USA/IN_Purdue_3698/2016 |
CG(p) |
7323 |
KY618837 |
Jung and Yingst, unpub. |
|
SVV-1 |
sw/USA/MI16-038766/2016 |
CG(p) |
7299 |
MN812958 |
Knowles et al., unpub. |
|
SVV-1 |
sw/US/CA/17-42-3D/2017
|
CG(p) |
7266
|
MH634506 |
Joshi et al., 2020
|
|
SVV-1 |
sw/US/CA/17-65-4D/2017 |
CG(p) |
7266 |
MH634507 |
Joshi et al., 2020 |
|
SVV-1 |
sw/US/CA/17-59-3D/2017 |
CG(p) |
7269 |
MH634508 |
Joshi et al., 2020 |
|
SVV-1 |
sw/US/CA/17-60-2D/2017 |
CG(p) |
7269 |
MH634509 |
Joshi et al., 2020 |
|
SVV-1 |
sw/US/CA/17-06-3D/2017 |
CG(p) |
7268 |
MH634510 |
Joshi et al., 2020 |
|
SVV-1 |
sw/US/CA/17-57-11D/2017 |
CG(p) |
7269 |
MH634511 |
Joshi et al., 2020 |
|
SVV-1 |
sw/US/CA/17-38-5D/2017 |
CG(p) |
7245 |
MH634512 |
Joshi et al., 2020 |
|
SVV-1 |
sw/US/CA/17-95-9D/2017 |
CG(p) |
7243 |
MH634513 |
Joshi et al., 2020 |
|
SVV-1 |
sw/US/CA/17-28-4D/2017 |
CG(p) |
7266 |
MH634514 |
Joshi et al., 2020 |
|
SVV-1 |
sw/US/CA/17-58-2D/2017 |
CG(p) |
7267 |
MH634515 |
Joshi et al., 2020 |
|
SVV-1 |
sw/US/CA/17-97-3D/2017 |
CG(p) |
7244 |
MH634516 |
Joshi et al., 2020 |
|
SVV-1 |
sw/US/CA/17-96-4D/2017 |
CG(p) |
7266 |
MH634517 |
Joshi et al., 2020 |
|
SVV-1 |
sw/US/CA/17-43-3D/2017 |
CG(p) |
7266 |
MH634518 |
Joshi et al., 2020 |
|
SVV-1 |
sw/US/CA/17-06-5D/2017 |
CG(p) |
7266 |
MH634519 |
Joshi et al., 2020 |
|
SVV-1 |
sw/US/CA/17-43-5D/2017 |
CG(p) |
7269 |
MH634520 |
Joshi et al., 2020 |
|
SVV-1 |
sw/US/CA/17-94-9D/2017 |
CG(p) |
7243 |
MH634521 |
Joshi et al., 2020 |
|
SVV-1 |
sw/US/CA/17-96-3D/2017 |
CG(p) |
7244 |
MH634522 |
Joshi et al., 2020 |
|
SVV-1 |
sw/USA/MI17-011956/2017 |
CG(p) |
7298 |
MN812959 |
Knowles et al., unpub. |
|
SVV-1 |
sw/USA/WI17-014775/2017 |
CG(p) |
7299 |
MN812960 |
Knowles et al., unpub. |
|
SVV-1 |
sw/LP8/USA/2013 |
CG(p) |
6788 |
OP184809 |
Mason et al., 2022 |
|
|
|
|
|
|
|
|
Vietnam |
SVV-1 |
sw/VIT/3187/2018 |
CG(p) |
7289 |
MH704432 |
Arzt et al., 2019 |
|
|
|
|
|
|
|
|
CG, complete genome
PPCR, polyprotein-coding region
(p), partial gene sequence
*, prototype strain
cc, cell culture
env, environmental
mo, mouse
sw, swine |
References
Arzt J, Bertram MR, Vu LT, Pauszek
SJ, Hartwig EJ, Smoliga GR, Palinski R, Stenfeldt C, Fish IH, Hoang
BH, Phuong NT, Hung VV, Vu PP, Dung NK, Dong PV, Tien NN, Dung DH.
First Detection and Genome Sequence of Senecavirus A in Vietnam.
Microbiol Resour Announc. 2019 Jan 17;8(3):e01247-18. doi:
10.1128/MRA.01247-18. PMID: 30687818; PMCID: PMC6346150.
Bennett B, Urzúa-Encina C,
Pardo-Roa C, Ariyama N, Lecocq C, Rivera C, Badía C, Suárez P,
Agredo M, Aguayo C, Ávila C, Araya H, Pérez P, Berrios F, Agüero B,
Mendieta V, Pituco EM, de Almeida IG, Medina R, Brito B, Johow M,
Ramirez VN. First report and genetic characterization of Seneca
Valley virus (SVV) in Chile. Transbound Emerg Dis. 2022
Nov;69(6):e3462-e3468. doi: 10.1111/tbed.14747. Epub 2022 Nov 11.
PMID: 36327129.
Chen, Z., Yuan, F., Li, Y., Shang,
P., Schroeder, R., Lechtenberg, K., Henningson, J., Hause, B., Bai,
J., Rowland, R.R., Clavijo, A. and Fang Y. (2016). Construction and
characterization of a full-length cDNA infectious clone of emerging
porcine Senecavirus A. Virology 497: 111-124.
Chen P, Yang F, Cao W, Liu H,
Zhang K, Liu X, Xu Z, Zhu Z, Zheng H. The Distribution of Different
Clades of Seneca Valley Viruses in Guangdong Province, China. Virol
Sin. 2018 Oct;33(5):394-401. doi: 10.1007/s12250-018-0056-8. Epub
2018 Oct 16. PubMed PMID: 30328012.
Guo, B., Piñeyro, P.E., Rademacher,
C.J., Zheng, Y., Li, G., Yuan, J., Hoang, H., Gauger, P.C., Madson,
D.M., Schwartz, K.J., Canning, P.E., Arruda, B.L., Cooper, V.L.,
Baum, D.H., Linhares, D.C., Main, R.G. and Yoon, K.J. (2016). Novel
Senecavirus A in swine with vesicular disease, United States, July
2015. Emerg. Infect. Dis. 22: 1325-1327.
Guo X, Zhao K, Liu X, Lei B, Zhang
W, Li X, Yuan W. Construction and Generation of a Recombinant
Senecavirus a Stably Expressing the NanoLuc Luciferase for
Quantitative Antiviral Assay. Front Microbiol. 2021 Oct 1;12:745502.
doi: 10.3389/fmicb.2021.745502. PMID: 34659180; PMCID: PMC8517534.
Hales, L.M., Knowles, N.J., Reddy,
P.S., Xu, L., Hay, C. and Hallenbeck, P.L. (2008). Complete genome
sequence analysis of Seneca Valley virus-001, a novel oncolytic
picornavirus. Journal of General Virology 89: 1265-1275.
Hales, L.M., Knowles, N.J. Jones,
B.H., Landgraf, J.G., Swenson, S.L., House, J.A., Skele, K.L.,
Burroughs, K.D. and Hallenbeck, P.L. Swine are susceptible to
infection with Seneca Valley virus, a new species of picornavirus.
Unpublished.
Hause, B.M., Myers, O., Duff, J.
and Hesse, R.A. (2016). Senecavirus A in pigs, United States, 2015.
Emerg. Infect. Dis. 22: 1323-1325.
Joshi, L.R., Mohr, K.A.,
Clement, T., Hain, K.S., Myers, B., Yaros, J., Nelson, E.A.,
Christopher-Hennings, J., Gava, D., Schaefer, R., Caron, L., Dee, S.
and Diel, D.G. (2016a). Detection of the emerging Senecavirus A in
pigs, mice and houseflies. J. Clin. Microbiol. 2016 Mar 30. pii:
JCM.03390-15 [Epub ahead of print].
Joshi LR, Fernandes MH, Clement T,
Lawson S, Pillatzki A, Resende TP, Vannucci FA, Kutish GF, Nelson
EA, Diel DG. (2016b). Pathogenesis of Senecavirus A infection in
finishing pigs. J. Gen. Virol. 97: 3267-3279.
Joshi LR, Mohr KA, Gava D, Kutish
G, Buysse AS, Vannucci FA, Piñeyro PE, Crossley BM, Schiltz JJ,
Jenkins-Moore M, Koster L, Tell R, Schaefer R, Marthaler D, Diel DG.
Genetic diversity and evolution of the emerging picornavirus Senecavirus
A. J Gen Virol. 2020 Feb;101(2):175-187. doi: 10.1099/jgv.0.001360.
Epub 2019 Dec 20. PMID: 31859611.
Knowles, N.J. and Hallenbeck, P.L.
(2005). A new picornavirus is most closely related to cardioviruses.
EUROPIC 2005: XIIIth Meeting of the European Study Group on the
Molecular Biology of Picornaviruses, Lunteren, The Netherlands,
23-29th May 2005. Abstract A14.
Laguardia-Nascimento, M.,
Gasparini, M.R., Sales, É.B., Rivetti, A.V. Jr., Sousa, N.M.,
Oliveira, A.M., Camargos, M.F., Pinheiro de Oliveira, T.F.,
Gonçalves, J.P., Madureira, M.C., Ribeiro, D.P., Marcondes, I.V.,
Barbosa-Stancioli, E.F. and Fonseca, A.A. Jr. (2016). Molecular
epidemiology of senecavirus A associated with vesicular disease in
pigs in Brazil. Vet. J. 216: 207-209.
Leme, R.A., Zotti, E., Alcântara,
B.K., Oliveira, M.V., Freitas, L.A., Alfieri, A.F., Alfieri, A.A.
(2015). Senecavirus A: an emerging vesicular infection in
Brazilian pig herds. Transbound. Emerg. Dis. 2015 Sep 23. doi:
10.1111/tbed.12430. [Epub ahead of print].
Liu, J., Ren, X., Li, Z., Xu, G.,
Lu, R. Zhang, K. and Ning, Z. (2018). Genetic and phylogenetic
analysis of reemerged novel Seneca Valley virus strains in Guangdong
province, 2017. Transbound. Emerg. Dis. 2018; 00:1–4.
Liu C, Li X, Liang L, Li J, Cui S.
(2019). Isolation and phylogenetic analysis of an emerging
Senecavirus A in China, 2017. Infect Genet Evol. 68: 77-83. doi:
10.1016/j.meegid.2018.12.009. PubMed PMID: 30529721.
Luo T, Xu S, Xiong J, Su D, He D.
Complete Genome Sequence of Senecavirus A Strain SVV HN16 Identified
in China. Genome Announc. 2017 Nov 2;5(44). pii: e01168-17. doi:
10.1128/genomeA.01168-17. PubMed PMID: 29097458; PubMed Central
PMCID: PMC5668534.
Maan, S., Batra, K., Chaudhary,
D., Punia, M., Kadian, V., Joshi, V.G. and Kumar, A. (2022).
Detection and Genomic Characterization of Senecavirus from Indian
Pigs. Indian J Anim Res, In press; DOI:
10.18805/IJAR.B-4722.
Mason J, Primavera V, Martignette
L, Clark B, Barrera J, Simmons J, Hurtle W, Neilan JG, Puckette M.
Comparative Evaluation of the Foot-and-Mouth Disease Virus
Permissive LF-BK αVβ6 Cell Line for Senecavirus A Research. Viruses.
2022 Aug 25;14(9):1875. doi: 10.3390/v14091875. PMID: 36146682;
PMCID: PMC9503874.
Qian, S., Fan, W., Qian, P., Chen,
H. and, Li, X. (2016). Isolation and full-genome sequencing of
Seneca Valley virus in piglets from China, 2016. Virol. J. 13(1):
173.
Saeng-Chuto K, Rodtian P,
Temeeyasen G, Wegner M, Nilubol D. The first detection of
Senecavirus A in pigs in Thailand, 2016. Transbound Emerg Dis. 2018
Feb;65(1):285-288. doi: 10.1111/tbed.12654. Epub 2017 May 5. PubMed
PMID: 28474854.
Saeng-Chuto K, Stott CJ, Wegner M,
Kaewprommal P, Piriyapongsa J, Nilubol D. The full-length genome
characterization, genetic diversity and evolutionary analyses of
Senecavirus A isolated in Thailand in 2016. Infect Genet Evol. 2018
Jun 8. pii: S1567-1348(18)30373-3. doi:
10.1016/j.meegid.2018.06.011. [Epub ahead of print] PubMed PMID:
29890334.
Sun, D., Vannucci, F., Knutson,
T.P., Corzo, C. and Marthaler, D.G. (2017). Emergence and
whole-genome sequence of Senecavirus A in Colombia. Transbound.
Emerg. Dis. 2017 Jul 16. doi: 10.1111/tbed.12669. [Epub ahead of
print]
Vannucci, F.A., Linhares, D.C., Barcellos, D.E.,
Lam, H.C., Collins, J. and Marthaler, D. (2015). Identification and
complete genome of Seneca Valley Virus in vesicular fluid and sera
of pigs affected with idiopathic vesicular disease, Brazil.
Transbound. Emerg. Dis. 2015 Sep 7. doi: 10.1111/tbed.12410. [Epub
ahead of print]. Wang, L., Prarat, M., Hayes, J.
and Zhang, Y. (2016). Detection and genomic characterization of
Senecavirus A, Ohio, USA, 2015. Emerg. Infect. Dis. 22: 1321-1323.
Wang, H., Li, C., Zhao, B., Yuan, T., Yang, D., Zhou, G. and Yu, L.
(2017). Complete genome sequence and phylogenetic analysis of
Senecavirus A isolated in Northeast China in 2016. Arch. Virol.
2017 Jul 7. doi: 10.1007/s00705-017-3480-4. [Epub ahead of print] Wu, Q., Zhao, X., Chen, Y., He,
X., Zhang, G. and Ma, J. (2016). Complete genome sequence of Seneca
Valley virus CH-01-2015 identified in China. Genome Announc. 4(1).
pii: e01509-15. Xu, W., Hole, K., Goolia, M.,
Pickering, B., Salo, T., Lung, O. and Nfon, C. (2017). Genome wide
analysis of the evolution of Senecavirus A from swine clinical
material and assembly yard environmental samples. PLoS One. 2017 May
5;12(5):e0176964. doi: 10.1371/journal.pone.0176964. eCollection
2017. Zhang, J., Pineyro, P., Chen, Q.,
Zheng, Y., Li, G., Rademacher, C., Derscheid, R., Guo, B., Yoon,
K.-J., Madson, D., Gauger, P., Schwartz, K., Harmon, K., Linhares,
D. and Main, R. (2015). Full-length genome sequences of Senecavirus
A from recent idiopathic vesicular disease outbreaks in U.S. swine.
Genome Announc. 3(6):e01270-15. doi:10.1128/genomeA.01270-15.
Zhang Z, Zhang Y, Lin X, Chen Z, Wu S. Development of a novel
reverse transcription droplet digital PCR assay for the sensitive
detection of Senecavirus A. Transbound Emerg Dis. 2018 Oct 30. doi:
10.1111/tbed.13056. [Epub ahead of print] PubMed PMID: 30375741.
Zhang Z, Ni B, Zhang L, Zhang H, Zhang F, Liu S, Dong Y, Cui J, Wu
F, Li, X, Huang B. Complete genome sequence of a novel
Senecavirus A isolate from an asymptomatic pig in China. Microbiol
Resour Announc. April 2019 8:e01660-18; doi:10.1128/MRA.01660-18.
Zhao,X., Wu,Q., Bai,Y., Chen,G., Zhou,L., Wu,Z., Li,Y., Zhou,W.,
Yang,H. and Ma,J. (2017). Phylogenetic and genome analysis of seven
senecavirus A isolates in China. Transbound. Emerg. Dis. 2017;
00:1–8. doi:10.1111/tbed.12619. [Epub ahead of print]
Zhu, Z., Yang, F., Chen, P., Liu, H., Cao, W., Zhang, K., Liu, X.
and Zheng, H. (2017). Emergence of novel Seneca Valley virus strains
in China, 2017. Transbound. Emerg. Dis. 2017 May 23. doi:
10.1111/tbed.12662. [Epub ahead of print] |