EV-D seqs

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Unassigned
Genus: Enterovirus

Species: Enterovirus D

Serotype: Enterovirus D68 (EV-D68)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Enterovirus D70 (EV-D70)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Enterovirus D94 (EV-D94)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Enterovirus D111 (EV-D111)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Enterovirus D120 (EV-D120)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR

(White areas indicate genes which haven't yet been sequenced completely;
grey areas are where only partial sequences exist)

References

Virus Strain

Region

Length

 Accession No. Reference Comments

Enterovirus D68 (EV-D68) (incl. human rhinovirus 87)
EV-D68 Fermon* (California/62) 5'NCR(p),VP0(p),3D(p) 199,
210,
387		 X87604 Pulli et al., 1995  
VP1 936 AF081348 Oberste et al., 1999  
CG 7367 AY426531 Oberste et al., 2004b  
EV-D68 Fermon* (California/62)
VR-561		 5' UTR(p) 602 AY062274 Blomqvist et al., 2002  
VP4+VP2(p) 408 AY062276 Blomqvist et al., 2002  
VP1(p) 324 AY062278 Blomqvist et al., 2002  
3D(p) 432 AY062282 Blomqvist et al., 2002  
EV-D68 Fermon* (California/62)
VR-1076		 5' UTR(p) 602 AY062275 Blomqvist et al., 2002  
VP4+VP2(p) 408 AY062277 Blomqvist et al., 2002  
VP1(p) 324 AY062279 Blomqvist et al., 2002  
3D(p) 432 AY062281 Blomqvist et al., 2002  
EV-D68 98/30259-37/99 VP1(p)

354

AY208116

 Norder et al., 2003  
EV-D68
(formerly
HRV-87)		 F02-3607-Corn* 5' UTR(p)

506

AF108187

 Andeweg et al., 1999  
5' UTR(p) 602 AY062273 Blomqvist et al., 2002  
VP4(p)+VP2(p) 417 AY040243 Savolainen et al., 2002  
VP1(p) 324 AY062280 Blomqvist et al., 2002  
VP1 936 AY355268 Ledford et al., unpub.  
3D(p) 432 AY062283 Blomqvist et al., 2002  
EV-D68 37-99 (France) CG

7333

EF107098

 Smura et al., 2007  
             

Enterovirus D70 (EV-D70)
EV-D70 J670/71* (Japan/71) CG 7390 D00820 Ryan et al., 1990  
CG 7390 download Takeda, 1989  
CG 7391 DQ201177 Kim and Racaniello, 2007  
EV-D70 ENG/71 VP1 918 D17595 Takeda et al., 1994  
EV-D70 FB/73 VP1 918 D17596 Takeda et al., 1994  
EV-D70 G10/72 VP1 918 D17597 Takeda et al., 1994  
EV-D70 HP185/81 VP1 918 D17598 Takeda et al., 1994  
EV-D70 HP85/78 VP1 918 D17599 Takeda et al., 1994  
EV-D70 I/72 VP1 918 D17600 Takeda et al., 1994  
EV-D70 ? VP1 918 D17601 Takeda et al., 1994  
EV-D70 J670/71 VP1 918 D17602 Takeda et al., 1994  
EV-D70 M51/76 VP1 918 D17603 Takeda et al., 1994  
EV-D70 M8/72 VP1 918 D17604 Takeda et al., 1994  
EV-D70 R20/71 VP1 918 D17605 Takeda et al., 1994  
EV-D70 R6/71 VP1 918 D17606 Takeda et al., 1994  
EV-D70 SEC32/71 VP1 918 D17607 Takeda et al., 1994  
EV-D70 T260/74 VP1 918 D17608 Takeda et al., 1994  
EV-D70 T62/73 VP1 918 D17609 Takeda et al., 1994  
EV-D70 TW266/81 VP1 918 D17610 Takeda et al., 1994  
EV-D70 V1250/81 VP1 918 D17611 Takeda et al., 1994  
EV-D70 V1635/81 VP1 918 D17612 Takeda et al., 1994  
EV-D70 G110/81 VP2(p) 174  D45233 Yamazaki et al., unpub. Genome position: 1080-1253
VP3(p) 178 D45237 Yamazaki et al., unpub. Genome position: 2210-2387
VP1(p) 332 D45229 Yamazaki et al., unpub. Genome position: 2630-2961
EV-D70 G2/74 VP2(p) 174  D45231 Yamazaki et al., unpub. Genome position: 1080-1253
VP3(p) 178 D45235 Yamazaki et al., unpub. Genome position: 2210-2387
VP1(p) 332 D45227 Yamazaki et al., unpub. Genome position: 2630-2961
EV-D70 Kumoi-2/93 VP2(p) 174  D45234 Yamazaki et al., unpub. Genome position: 1080-1253
VP3(p) 178 D45238 Yamazaki et al., unpub. Genome position: 2210-2387
VP1(p) 332 D45230 Yamazaki et al., unpub. Genome position: 2630-2961
EV-D70 M42/76 VP2(p) 174  D45232 Yamazaki et al., unpub. Genome position: 1080-1253
VP3(p) 178 D45236 Yamazaki et al., unpub Genome position: 2210-2387
VP1(p) 332 D45228 Yamazaki et al., unpub Genome position: 2630-2961
EV-D70 B2556 5' UTR(p) 393 Z78125 Shulman et al., 1997  
EV-D70 B2579 VP1(p) 61 Z78126 Shulman et al., 1997  
EV-D70 B2591 5' UTR(p) 394 Z78127 Shulman et al., 1997  
VP1(p) 61 Z78128 Shulman et al., 1997  
EV-D70 B2592 5' UTR(p) 358 Z78129 Shulman et al., 1997  
VP1(p) 61 Z78132 Shulman et al., 1997  
EV-D70 B2592, TC isolate 5' UTR(p) 358 Z78130 Shulman et al., 1997  
VP1(p) 61 Z78131 Shulman et al., 1997  
EV-D70 B2599 5' UTR(p) 394 Z78133 Shulman et al., 1997  
VP1(p) 61 Z78134 Shulman et al., 1997  
EV-D70 B2602 VP1(p) 61 Z78135 Shulman et al., 1997  
EV-D70 B2603 VP1(p) 61 Z78136 Shulman et al., 1997  
EV-D70 B3079 5' UTR(p) 394 Z78137 Shulman et al., 1997  
VP1(p) 61 Z78138 Shulman et al., 1997  
EV-D70 J760/71 lab passage in Israel 5' UTR(p) 394 Z78139 Shulman et al., 1997  
VP1(p) 61 Z78140 Shulman et al., 1997  
EV-D70 MNC9/94/Japan VP1(p) 332 AB005258 Uchio et al., 1996  
             

Enterovirus D94 (EV-D94)
EV-D94 E210* (Egypt) CG 7364 DQ916376 Smura et al., 2007  
EV-D94 E430 (Egypt) VP1 933 DQ916377 Smura et al., 2007  
EV-D94 E435 (Egypt) VP1 933 DQ916378 Smura et al., 2007  
EV-D94 E438 (Egypt) VP1 933 DQ916379 Smura et al., 2007  
EV-D94 19/04 (DRC) CG 7331 EF107097 Smura et al., 2007  
EV-D94 hu/NIG-14-534 (Niger, 2014) CG(p) 7293 MW384880 Fernandez-Garcia et al., unpub.  
             

Enterovirus D111 (EV-D111)
EV-D111 KK2640 (Cameroon, 2006) (chimpanzee,
Pan troglodytes)		 5' UTR(p) 424 JF416929 Harvala et al., 2011  
VP4+VP2(p) 404 JF416932
VP3(p)+VP1+2A(p) 1051 JF416935
3D(p) 937 JF416938
EV-D111 17-04 VP1(p)+2A(p) 1153 EF127249 Junttila et al., 2007  
EV-D111 sewage/NGR-KAT-1263/Nigeria/2017 CG(p) 7315 MW384881 Majumdar & Martin, unpub.  
             

Enterovirus D120(EV-D120)
EV-D120 MB6201 (Cameroon; gorilla) VP3(p)+VP1+2A(p) 1293 KF040080 Simmonds et al., unpub.  
EV-D120 MB6128 (Cameroon; gorilla) VP3(p)+VP1+2A(p) 1293 KF040081 Simmonds et al., unpub.  
             
CG, complete genome
(p), partial gene sequence
*, prototype strain
 
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