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Genus: Enterovirus

Species: Rhinovirus C

The proposal for the designation of RV-C types 1-33 has been published (Simmonds et al., 2010).

Type: human rhinovirus C1 (HRV-C1)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C2 (HRV-C2)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C3 (HRV-C3)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C4 (HRV-C4)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C5 (HRV-C5)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C6 (HRV-C6)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C7 (HRV-C7)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C8 (HRV-C8)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C9 (HRV-C9)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C10 (HRV-C10)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C11 (HRV-C11)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C12 (HRV-C12)
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C13 (HRV-C13)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C14 (HRV-C14)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C15 (HRV-C15)
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C16 (HRV-C16)
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C17 (HRV-C17)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C18 (HRV-C18)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C19 (HRV-C19)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C20 (HRV-C20)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C21 (HRV-C21)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C22 (HRV-C22)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C23 (HRV-C23)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C24 (HRV-C24)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C25 (HRV-C25)
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C26 (HRV-C26)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C27 (HRV-C27)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C28 (HRV-C28)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C29 (HRV-C29)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C30 (HRV-C30)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C31 (HRV-C31)
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C32 (HRV-C32)
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C33 (HRV-C33)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C34 (HRV-C34)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C35 (HRV-C35)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C36 (HRV-C36)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C37 (HRV-C37)
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C38 (HRV-C38)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C39 (HRV-C39)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C40 (HRV-C40)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C41 (HRV-C41)
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C42 (HRV-C42)
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C43 (HRV-C43)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C44 (HRV-C44)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C45 (HRV-C45)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C46 (HRV-C46)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C47 (HRV-C47)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C48 (HRV-C48)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C49 (HRV-C49)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C50 (HRV-C50)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C51 (HRV-C51)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C52 (HRV-C52)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C53 (HRV-C53)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C54 (HRV-C54)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C55 (HRV-C55)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C56 (HRV-C56)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: human rhinovirus C57 (HRV-C57)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
     

(White areas indicate genes which haven't yet been sequenced completely; grey areas are where only partial sequences exist)

References

Virus Strain Region Length Accession No. Reference Comments

Human rhinovirus C1 (HRV-C1)
HRV-C1  NAT001* CG 6944 EF077279 Kistler et al., 2007 bases missing from 5' end
             

Human rhinovirus C2 (HRV-C2)
HRV-C2  NAT045* CG 7015 EF077280 Kistler et al., 2007 bases missing from 5' end
             

Human rhinovirus C3 (HRV-C3)
HRV-C3  QPM* CG 7134 EF186077 McErlean et al., 2007  
             

Human rhinovirus C4 (HRV-C4)
HRV-C4  024* CG 7099 EF582385 Lau et al., 2007 Hong Kong
             

Human rhinovirus C5 (HRV-C5)
HRV-C5  025* CG 7114 EF582386 Lau et al., 2007 Hong Kong
             

Human rhinovirus C6 (HRV-C6)
HRV-C6  026* CG 7086 EF582387 Lau et al., 2007 Hong Kong
HRV-C6  p1264_s3778_1999 CG(p) 6528 JN815245 Liggett et al., 2014  
             

Human rhinovirus C7 (HRV-C7)
HRV-C7 NY-074 (1078)* CG 7072 DQ875932 Lamson et al., 2006;
Briese et al., unpub.		  
HRV-C7 p1028_sR3259_2010 CG(p) 6423 JN798570 Liggett et al., 2014  
             

Human rhinovirus C8 (HRV-C8)
HRV-C8  N4* CG 7107 GQ223227 Huang et al., 2009 China 2006
             

Human rhinovirus C9 (HRV-C9)
HRV-C9  N10* CG 7111 GQ223228 Huang et al., 2009 China 2007
             

Human rhinovirus C10 (HRV-C10)
HRV-C10 QCE* CG 7010 GQ323774 Arden et al., unpub. Aus, 2003
HRV-C10   VP1 831 EU935600 Faux et al., unpub.  
             

Human rhinovirus C11 (HRV-C11)
HRV-C11 CL-170085* CG 7108 EU840952 Tapparel et al., 2009a,b Swi-2008
HRV-C11    VP1 775 FJ392317 Tapparel et al., 2009b  
             

Human rhinovirus C12 (HRV-C12)
HRV-C12 Resp_3922/07* VP1 HM236958 McIntyre et al., 2010
HRV-C12   VP4/VP2(p)   EF077264 Kistler et al., 2007  
             

Human rhinovirus C13 (HRV-C13)
HRV-C13 Resp_2951/06* VP1   HM236908 McIntyre et al., 2010  
HRV-C13 VP4/VP2(p) EU081795 Renwick et al., 2007
             

Human rhinovirus C14 (HRV-C14)
HRV-C14 Resp_3090/06* VP1   HM236911 McIntyre et al., 2010  
HRV-C14   VP4/VP2(p)   EU081796 Renwick et al., 2007  
             

Human rhinovirus C15 (HRV-C15)
HRV-C15 Resp_4644/07* VP1 840 HM236963 McIntyre et al., 2010  
HRV-C15 06-20 VP4/VP2(p) 395 EU081800 Renwick et al., 2007  
HRV-C15 W10 (USA, 2007) CG 7119 GU219984 Bochkov et al., 2011  
HRV-C15 p1259_s2935_1999 CG(p) 7001 JN837688 Liggett et al., 2014  
             

Human rhinovirus C16 (HRV-C16)
HRV-C16 Resp_5910/07* VP1   HM236944 McIntyre et al., 2010  
HRV-C16 g2-4 VP4/VP2(p)   EU081808 Renwick et al., 2007  
HRV-C16 ID639T/TAN/2008 5'UTR(p)+P1   KR997882 L'Huillier et al., 2015  
             

Human rhinovirus C17 (HRV-C17)
HRV-C17 Resp_5145/07* VP1   HM236936 McIntyre et al., 2010  
HRV-C17 06-582 VP4/VP2(p)   EU081809 Renwick et al., 2007  
             

Human rhinovirus C18 (HRV-C18)
HRV-C18 Resp_3631/07* VP1   HM236918 McIntyre et al., 2010  
HRV-C18 PNC41788/FIN/1996 VP4/VP2(p)   EU590074 Savolainen-Kopra et al., 2009a  
             

Human rhinovirus C19 (HRV-C19)
HRV-C19 CL-Fnp5* P1 3055 EU840728 Tapparel et al., 2009a Swi, 2003
HRV-C19   VP4/VP2(p)   EU697850 Briese et al., 2008  
             

Human rhinovirus C20 (HRV-C20)
HRV-C20 Resp_3995/07* VP1   HM236923 McIntyre et al., 2010  
HRV-C20   VP4/VP2(p)   EU697851 Briese et al., 2008  
             

Human rhinovirus C21 (HRV-C21)
HRV-C21 Resp_5071/07* VP1   HM236903 McIntyre et al., 2010  
HRV-C21   VP4/VP2(p)   EU752377 Miller et al., 2009a  
             

Human rhinovirus C22 (HRV-C22)
HRV-C22 Resp_2748/06* VP1   HM236905 McIntyre et al., 2010  
HRV-C22   VP4/VP2(p)   EU752381 Miller et al., 2009a  
HRV-C22 3430-MY-10 CG 7090 KJ675507 Chee et al., unpub.  
             

Human rhinovirus C23 (HRV-C23)
HRV-C23 Resp_3053/06* VP1   HM236901 McIntyre et al., 2010  
HRV-C23   VP4/VP2(p)   EU752424 Miller et al., 2009a  
HRV-C23 8713-MY-10 CG 7112 KJ675506 Chee et al., unpub.  
             

Human rhinovirus C24 (HRV-C24)
HRV-C24 Resp_7147/07* VP1   HM236939 McIntyre et al., 2010  
HRV-C24   VP4/VP2(p)   EU752426 Miller et al., 2009a  
             

Human rhinovirus C25 (HRV-C25)
HRV-C25 Resp_2832/06* VP1   HM236952 McIntyre et al., 2010  
HRV-C25   VP4/VP2(p)   EU752427 Miller et al., 2009a  
HRV-C25 LZ269 CG 7139 JF317013 Yan et al., unpub. China: Feb-2007
             

Human rhinovirus C26 (HRV-C26)
HRV-C26 Resp_2514/06* VP1   HM236904 McIntyre et al., 2010  
HRV-C26   VP4/VP2(p)   EU752441 Miller et al., 2009a  
             

Human rhinovirus C27 (HRV-C27)
HRV-C27 Resp_2784/06* VP1   HM236906 McIntyre et al., 2010  
HRV-C27   VP4/VP2(p)   GQ223122 Huang et al., 2009  
             

Human rhinovirus C28 (HRV-C28)
HRV-C28 Resp_3105/06* VP1   HM236954 McIntyre et al., 2010  
HRV-C28   VP4/VP2(p)   GQ223134 Huang et al., 2009  
             

Human rhinovirus C29 (HRV-C29)
HRV-C29 Resp_5345/07* VP1   HM236949 McIntyre et al., 2010  
HRV-C29   VP4/VP2(p)   FJ615699 Miller et al., 2009b  
             

Human rhinovirus C30 (HRV-C30)
HRV-C30 Resp_3898/07* VP1   HM236968 McIntyre et al., 2010  
HRV-C30   VP4/VP2(p)   GQ476669 Wisdom et al., 2009b  
             

Human rhinovirus C31 (HRV-C31)
HRV-C31 Resp_4923/07* VP1   HM236964 McIntyre et al., 2010  
HRV-C31   VP4/VP2(p)   GU294380 Wisdom et al., 2009b  
             

Human rhinovirus C32 (HRV-C32)
HRV-C32 Resp_6131/07* VP1   HM236897 McIntyre et al., 2010  
HRV-C32   VP4/VP2(p)   GU294466 Wisdom et al., 2009b  
             

Human rhinovirus C33 (HRV-C33)
HRV-C33 Resp_4917/07* VP1   HM236934 McIntyre et al., 2010  
HRV-C33   VP4/VP2(p)   GU294480 Wisdom et al., 2009b  
             

Human rhinovirus C34 (HRV-C34)
HRV-C34 pico58* nearly CG   n/a A.M. Lindberg et al., unpub.  
HRV-C34 LRTI-metagenomic-2
(Sweden/2004-05)		 P1(p)+2A 2832 JF436926 Lysholm et al., 2012  
HRV-C34 PNG7111-3625 (2007) VP1 852 JF519758 Chidlow et al., 2012  
HRV-C34 Mex14/Mexico/2014 pp-coding 6456 KM486097 Vazquez-Perez et al., unpub.  
             

Human rhinovirus C35 (HRV-C35)
HRV-C35 LRTI-metagenomic-1 nearly CG 6864 JF436925  Lysholm et al., 2012  
HRV-C35 06-739b VP4+VP2(p) 395 EU081790 Renwick et al., 2007  
             

Human rhinovirus C36 (HRV-C36)
HRV-C36         to be updated (see here)  
             

Human rhinovirus C37 (HRV-C37)
HRV-C37         to be updated (see here)  
             

Human rhinovirus C38 (HRV-C38)
HRV-C38         to be updated (see here)  
             

Human rhinovirus C39 (HRV-C39)
HRV-C39 WA823M02 CG 7115 JN205461 Chidlow et al., unpublished  
             

Human rhinovirus C40 (HRV-C40)
HRV-C40 p1221_sR1448_2009 CG(p) 6613 JN815251 Liggett et al., 2014  
             

Human rhinovirus C41 (HRV-C41)
HRV-C41 2536/USA/2000 CG 7115 KF958311 Nakagome et al., 2014  
HRV-C41 g2-23 VP4+VP2(p) 395 EU081803 Renwick et al., 2007  
HRV-C41 Resp_9449/08 VP1 818 JF416323 McIntyre et al., pc 2011  
HRV-C41 Resp_10061/08 VP1 818 JF416305 McIntyre et al., pc 2011  
             

Human rhinovirus C42 (HRV-C42)
HRV-C42         to be updated (see here)
HRV-C42 1570-MY-10 CG 7123 KJ675505 Chee et al., unpub.  
             

Human rhinovirus C43 (HRV-C43)
HRV-C43 p1281_s6410_1999 CG(p) 6734 JN815249 Liggett et al., 2014  
HRV-C43 06-230 VP4/VP2(p) 395 EU081807 Renwick et al., 2007  
HRV-C43 Resp_13229/08 VP1 815 JF416307 McIntyre & Simmonds, unpub.  
HRV-C43 Resp_14458/08 VP1 815 JF416309 McIntyre & Simmonds, unpub.  
             

Human rhinovirus C44 (HRV-C44)
HRV-C44 PNC40168 VP4+VP2(p) 414 EU590061 Savolainen-Kopra et al., 2009a  
HRV-C44 Resp_15588/09 VP1 833 JF416310 McIntyre & Simmonds, unpub.  
             

Human rhinovirus C45 (HRV-C45)
HRV-C45 p1084_s3920_2000 CG(p) 6847 JN837686 Liggett et al., 2014  
HRV-C45 PNC40449 VP4/VP2(p) 414 EU590064 Savolainen-Kopra et al., 2009a  
HRV-C45 Resp_13958/08 VP1 815 JF416308 McIntyre & Simmonds, unpub.  
HRV-C45 cpz1-2013/UGA CG(p) 6972 KY624849 Scully et al., 2018 chimpanzee
             

Human rhinovirus C46 (HRV-C46)
HRV-C46 KR2315 VP4+VP2(p) 441 FJ869950 Calvo et al., 2009  
HRV-C46 Resp_5153/07 VP1 815 JF416318 McIntyre & Simmonds, unpub.  
VP4+VP2(p) 414 GU294446 Wisdom et al., 2009  
HRV-C46 Resp_5154/07 VP1 815 JF416319 McIntyre & Simmonds, unpub.  
VP4+VP2(p) 414 GU294447 Wisdom et al., 2009  
             

Human rhinovirus C47 (HRV-C47)
HRV-C47 K1091 301104 VP4+VP2(p) 414 GQ466482 Savolainen-Kopra et al., 2009c  
HRV-C47 PNG7254-3947 VP1 837 JF519760 Chidlow et al., 2012  
VP4+VP2(p) 429 JF519761 Chidlow et al., 2012  
             

Human rhinovirus C48 (HRV-C48)
HRV-C48 PNG7293-3193 VP1 840 JF519762 Chidlow et al., 2012  
VP4+VP2(p) 433 JF519763 Chidlow et al., 2012  
             

Human rhinovirus C49 (HRV-C49)
HRV-C49 p1277_s6237_2000 CG(p) 6801 JN798566 Liggett et al., 2014  
HRV-C49 p1082_s6463_2000 CG(p) 6416 JN798568 Liggett et al., 2014  
             

Human rhinovirus C50 (HRV-C50)
HRV-C50 SG1/AUS/2008 VP3(p) to (p) 953 JQ739202 Mackay et al., unpub.
CG(p) 6928 KF688606 Mackay et al., unpub.  
             

Human rhinovirus C51 (HRV-C51)
HRV-C51 LZ508/China/2007   CG 7154 JF317015 Yan et al., unpub.  
HRV-C51 JAL-1/USA/2010 CG 7155 JX291115 Lednicky & Loeb, unpub.  
HRV-C51 HRV-CO-1368 VP4+VP2(p) 415 EU743925 Dominguez et al. (2008)  
             

Human rhinovirus C52 (HRV-C52)
HRV-C52 D1880-V1 VP4+VP2(p) 431 n/a Zlateva et al., unpub.  
VP3(p)+VP1+2A(p) 1287 n/a Zlateva et al., unpub.  
             

Human rhinovirus C53 (HRV-C53)
HRV-C53 H1380-V1 VP4+VP2(p) 440 n/a Zlateva et al., unpub.  
VP3(p)+VP1+2A(p) 1324 n/a Zlateva et al., unpub.  
             

Human rhinovirus C54 (HRV-C54)
HRV-C54 D3490/SPA/2009 CG 7054 KP282614 Jazaeri Farsani et al., 2015  
             

Human rhinovirus C55 (HRV-C55)
HRV-C55 ID529T/TAN/2008 5'UTR-2A 3124 KR997885 L'Huillier et al., 2015  
             

Human rhinovirus C56 (HRV-C56)
HRV-C56 JPN/Kumamoto1/2009 VP2-VP1 2343 LC004772 Kuroda et al., 2015  
             

Human rhinovirus C57 (HRV-C57)
HRV-C57 7383-MY-10 CG 7073 KP890662 Khaw et al., 2016  
             

waiting to be placed in the above table...
Virus Strain Region Length Accession No. Reference Comments
HRV-? QPM-001 VP4 198 EF512632 McErlean et al., 2007  
VP2 790 EF512649 McErlean et al., 2007  
VP1 825 EF512666 McErlean et al., 2007  
HRV-? QPM-002 VP4 198 EF512633 McErlean et al., 2007  
VP2 790 EF512663 McErlean et al., 2007  
VP1 825 EF512667 McErlean et al., 2007  
HRV-? QPM-003 VP4 198 EF512639 McErlean et al., 2007  
VP2 790 EF512655 McErlean et al., 2007  
VP1 825 EF512678 McErlean et al., 2007  
HRV-? QPM-004 VP4 198 EF512643 McErlean et al., 2007  
VP2 790 EF512653 McErlean et al., 2007  
VP1 825 EF512670 McErlean et al., 2007  
HRV-? QPM-005 VP4 198 EF512642 McErlean et al., 2007  
VP2 790 EF512665 McErlean et al., 2007  
VP1 825 EF512668 McErlean et al., 2007  
HRV-? QPM-006 VP4 198 EF512644 McErlean et al., 2007  
VP2 790 EF512654 McErlean et al., 2007  
VP1 825 EF512673 McErlean et al., 2007  
HRV-? QPM-007 VP4 198 EF512634 McErlean et al., 2007  
VP2 790 EF512657 McErlean et al., 2007  
VP1 825 EF512669 McErlean et al., 2007  
HRV-? QPM-008 VP4 198 EF512636 McErlean et al., 2007  
VP2 790 EF512652 McErlean et al., 2007  
VP1 825 EF512680 McErlean et al., 2007  
HRV-? QPM-009 VP4 198 EF512648 McErlean et al., 2007
VP2 790 EF512664 McErlean et al., 2007  
VP1 825 EF512682 McErlean et al., 2007  
HRV-? QPM-010 VP4 198 EF512646 McErlean et al., 2007  
VP2 790 EF512659 McErlean et al., 2007
VP1 825 EF512672 McErlean et al., 2007  
HRV-? QPM-011 VP4 198 EF512637 McErlean et al., 2007  
VP2 790 EF512650 McErlean et al., 2007  
VP1 825 EF512671 McErlean et al., 2007  
HRV-? QPM-012 VP4 198 EF512641 McErlean et al., 2007  
VP2 790 EF512651 McErlean et al., 2007  
VP1 825 EF512675 McErlean et al., 2007  
HRV-? QPM-013 VP4 198 EF512640 McErlean et al., 2007  
VP2 790 EF512656 McErlean et al., 2007  
VP1 825 EF512679 McErlean et al., 2007  
HRV-? QPM-014 VP4 198 EF512647 McErlean et al., 2007  
VP2 790 EF512660 McErlean et al., 2007  
VP1 825 EF512681 McErlean et al., 2007  
HRV-? QPM-015 VP4 198 EF512645 McErlean et al., 2007  
VP2 790 EF512662 McErlean et al., 2007  
VP1 825 EF512674 McErlean et al., 2007  
HRV-? QPM-016 VP4 198 EF512635 McErlean et al., 2007  
VP2 790 EF512658 McErlean et al., 2007  
VP1 825 EF512677 McErlean et al., 2007  
HRV-? QPM-17 VP4 198 EF512638 McErlean et al., 2007  
VP2 790 EF512661 McErlean et al., 2007  
VP1 825 EF512676 McErlean et al., 2007  
HRV-? NY-041 (1044) VP4 201 DQ875921 Lamson et al., 2006  
HRV-? NY-063 (1067) VP4 201 DQ875924 Lamson et al., 2006  
HRV-? NY-1085 (2005) VP4 201 DQ875925 Lamson et al., 2006  
HRV-? NY-042 (1045) VP4 201 DQ875926 Lamson et al., 2006  
HRV-? NY-060 (1064) VP4 201 DQ875928 Lamson et al., 2006  
HRV-? NY-003 (1003) VP4 201 DQ875929 Lamson et al., 2006  
HRV-? NY-028 (1031) VP4 201 DQ875931 Lamson et al., 2006  
HRV-? NAT009 VP4/VP2(p)   EF077237 Kistler et al., 2007  
HRV-? NAT018 VP4/VP2(p)   EF077238 Kistler et al., 2007  
HRV-? NAT051 VP4/VP2(p)   EF077239 Kistler et al., 2007  
HRV-? NAT028 VP4/VP2(p)   EF077240 Kistler et al., 2007  
HRV-? NAT021 VP4/VP2(p)   EF077241 Kistler et al., 2007  
HRV-? NAT038 VP4/VP2(p)   EF077242 Kistler et al., 2007  
HRV-? NAT040 VP4/VP2(p)   EF077243 Kistler et al., 2007  
HRV-? NAT046 VP4/VP2(p)   EF077244 Kistler et al., 2007  
HRV-? NAT053 VP4/VP2(p)   EF077245 Kistler et al., 2007  
HRV-? NAT047 VP4/VP2(p)   EF077246 Kistler et al., 2007  
HRV-? NAT049 VP4/VP2(p)   EF077247 Kistler et al., 2007  
HRV-? NAT025 VP4/VP2(p)   EF077248 Kistler et al., 2007  
HRV-? NAT026 VP4/VP2(p)   EF077249 Kistler et al., 2007  
HRV-? NAT008 VP4/VP2(p)   EF077250 Kistler et al., 2007  
HRV-? NAT023 VP4/VP2(p)   EF077251 Kistler et al., 2007  
HRV-? NAT001 VP4/VP2(p)   EF077252 Kistler et al., 2007  
HRV-? NAT045 VP4/VP2(p)   EF077253 Kistler et al., 2007  
HRV-? NAT063 VP4/VP2(p)   EF077254 Kistler et al., 2007  
HRV-? NAT065 VP4/VP2(p)   EF077255 Kistler et al., 2007  
HRV-? NAT069 VP4/VP2(p)   EF077256 Kistler et al., 2007
HRV-? NAT080 VP4/VP2(p)   EF077257 Kistler et al., 2007  
HRV-? NAT087 VP4/VP2(p)   EF077258 Kistler et al., 2007  
HRV-? NAT088 VP4/VP2(p)   EF077259 Kistler et al., 2007  
HRV-? NAT059 VP4/VP2(p)   EF077260 Kistler et al., 2007
HRV-? NAT060 VP4/VP2(p)   EF077261 Kistler et al., 2007  
HRV-? NAT066 VP4/VP2(p)   EF077262 Kistler et al., 2007  
HRV-? NAT070 VP4/VP2(p)   EF077263 Kistler et al., 2007  
HRV-? NAT083 VP4/VP2(p)   EF077264 Kistler et al., 2007
HRV-? NAT084 VP4/VP2(p)   EF077265 Kistler et al., 2007
HRV-? NAT057 VP4/VP2(p)   EF077266 Kistler et al., 2007  
HRV-? NAT061 VP4/VP2(p)   EF077267 Kistler et al., 2007  
HRV-? NAT062 VP4/VP2(p)   EF077268 Kistler et al., 2007  
HRV-? NAT089 VP4/VP2(p)   EF077269 Kistler et al., 2007
HRV-? NAT024 VP4/VP2(p) 446 EF077270 Kistler et al., 2007
HRV-? NAT037 VP4/VP2(p) 561 EF077281 Kistler et al., 2007  
HRV-? 026-001 (Aus, 2002) VP1 825 EU935601 Faux et al., unpub.  
HRV-? QIM-001 VP1(p) 714 FJ770372 Faux & Mackay, unpub.  
             
CG = complete genome
(p) = partial gene sequence

References

Arden, K.E., Faux, C.E., O'Neill, N., McErlean, P., Lambert, S.B., Nissen, M.D., Sloots, T.P. and Mackay, I.M. Molecular and clinical characterization of human rhinovirus (HRV) QCE, a novel HRV C strain detected predominantly in children with wheeze during 2003. Unpublished.

Bochkov, Y.A., Palmenberg, A.C., Lee, W.M., Rathe, J.A., Amineva, S.P., Sun, X., Pasic, T.R., Jarjour, N.N., Liggett, S.B., Gern, J.E. (2011). Molecular modeling, organ culture and reverse genetics for a newly identified human rhinovirus C, Nat. Med. 17: 627-632.

Chidlow, G.R., Laing, I.A., Harnett, G.B., Greenhill, A.R., Phuanukoonnon, S., Siba, P.M., Pomat, W.S., Shellam, G.R., Smith, D.W. and Lehmann, D. (2012). Respiratory viral pathogens associated with lower respiratory tract disease among young children in the highlands of Papua New Guinea. J. Clin. Virol. 54: 235-239.

Faux, C.E., Lambert, S.B., Nissen, M.D., Sloots, T.P. and Mackay, I.M. Molecular and clinical features of HRV-C026 [AUS/2002] variants detected in Australian children. Unpublished.

Huang, T., Wang, W., Bessaud, M., Ren, P., Sheng, J., Yan, H.J., Zhang, J., Lin, X., Wang, Y.J., Delpeyroux, F. and Deubel, V. (2009). Evidence of recombination and genetic diversity in human rhinoviruses in children with acute respiratory infection. PLoS ONE 4 (7), E6355.

Jazaeri Farsani, S.M., Oude Munnink, B.B., Canuti, M., Deijs, M., Cotten, M., Jebbink, M.F., Verhoeven, J., Kellam, P., Loens, K., Goossens, H., Ieven, M. and van der Hoek, L. (2015). Identification of a novel human rhinovirus C type by antibody capture VIDISCA-454. Viruses 7: 239-251.

Khaw YS, Chan YF, Jafar FL, Othman N, Chee HY. Comparative Genetic Analyses of Human Rhinovirus C (HRV-C) Complete Genome from Malaysia. Front Microbiol. 2016 Apr 29;7:543. doi: 10.3389/fmicb.2016.00543. eCollection 2016. PubMed PMID: 27199901; PubMed Central PMCID: PMC4851184.

Kistler, A., Avila, P.C., Rouskin, S., Wang, D., Ward, T., Yagi, S., Schnurr, D., Ganem, D., Derisi, J.L. and Boushey, H.A. (2007). Pan-viral screening of respiratory tract infections in adults with and without asthma reveals unexpected human coronavirus and human rhinovirus diversity. J. Infect. Dis. 196(6):817-825.

Lamson, D., Renwick, N., Kapoor, V., Liu, Z., Palacios, G., Ju, J., Dean, A., St George, K., Briese, T. and Ian Lipkin, W. (2006). MassTag polymerase-chain-reaction detection of respiratory pathogens, including a new rhinovirus genotype, that caused influenza-like illness in New York State during 2004-2005. J. Infect. Dis. 194: 1398-1402.

Lau, S.K., Yip, C.C., Tsoi, H.W., Lee, R.A., So, L.Y., Lau, Y.L., Chan, K.H., Woo, P.C. and Yuen, K.Y. (2007). Clinical features and complete genome characterization of a distinct human rhinovirus (HRV) genetic cluster, probably representing a previously undetected HRV species, HRV-C, associated with acute respiratory illness in children. J. Clin. Microbiol. 45: 3655-3664.

Lysholm, F., Wetterbom, A., Lindau, C., Darban, H., Bjerkner, A., Fahlander, K., Lindberg, A.M., Persson, B., Allander, T. and Andersson, B. (2012). Characterization of the viral microbiome in patients with severe lower respiratory tract infections, using metagenomic sequencing, PLoS ONE 7 (2), E30875.

McErlean, P., Shackelton, L.A., Lambert, S.B., Nissen, M.D., Sloots, T.P. and Mackay, I.M. (2007). Characterisation of a newly identified human rhinovirus, HRV-QPM, discovered in infants with bronchiolitis. J. Clin. Virol. 39: 67-75.

Simmonds, P., McIntyre, C.L., Savolainen-Kopra, C., Tapparel, C., Mackay, I.M. and Hovi, T. (2010). Proposals for the classification of human rhinovirus species C into genotypically-assigned types. J. Gen. Virol. 91: 2409–2419. 2010 Jul 7. [Epub ahead of print] PubMed PMID: 20610666.

Tapparel, C., Junier, T., Gerlach, D., Van-Belle, S., Turin, L., Cordey, S., Muhlemann, K., Regamey, N., Aubert, J.D., Soccal, P.M., Eigenmann, P., Zdobnov, E. and Kaiser, L. (2009a). New respiratory enterovirus and recombinant rhinoviruses among circulating picornaviruses. Emerging Infect. Dis. 15: 719-726.

Tapparel, C., L'Huillier, A.G., Rougemont, A.L., Beghetti, M., Barazzone-Argiroffo, C. and Kaiser, L. (2009b). Pneumonia and pericarditis in a child with HRV-C infection: a case report. J. Clin. Virol. 45: 157-160.