| |
Genus: Enterovirus
Species: Enterovirus cerhino
The proposal for the designation of RV-C types 1-33 has
been published (Simmonds
et al., 2010).
| Type: rhinovirus C1 (RV-C1) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C2 (RV-C2) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C3 (RV-C3) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C4 (RV-C4) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C5 (RV-C5) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C6 (RV-C6) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C7 (RV-C7) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C8 (RV-C8) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C9 (RV-C9) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C10 (RV-C10) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C11 (RV-C11) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C12 (RV-C12) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C13 (RV-C13) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C14 (RV-C14) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C15 (RV-C15) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C16 (RV-C16) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C17 (RV-C17) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C18 (RV-C18) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C19 (RV-C19) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C20 (RV-C20) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C21 (RV-C21) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C22 (RV-C22) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C23 (RV-C23) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C24 (RV-C24) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C25 (RV-C25) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C26 (RV-C26) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C27 (RV-C27) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C28 (RV-C28) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C29 (RV-C29) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C30 (RV-C30) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C31 (RV-C31) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C32 (RV-C32) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C33 (RV-C33) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C34 (RV-C34) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C35 (RV-C35) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C36 (RV-C36) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C37 (RV-C37) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C38 (RV-C38) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C39 (RV-C39) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C40 (RV-C40) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C41 (RV-C41) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C42 (RV-C42) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C43 (RV-C43) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C44 (RV-C44) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C45 (RV-C45) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C46 (RV-C46) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C47 (RV-C47) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C48 (RV-C48) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C49 (RV-C49) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C50 (RV-C50) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C51 (RV-C51) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C52 (RV-C52) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C53 (RV-C53) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C54 (RV-C54) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C55 (RV-C55) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C56 (RV-C56) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: rhinovirus C57 (RV-C57) |
|
| 5'
UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| |
|
|
(White areas indicate genes which haven't yet been
sequenced completely; grey areas are where only partial sequences
exist)
References
| Virus |
Strain |
Region |
Length |
Accession
No. |
Reference |
Comments |
Rhinovirus C1 (RV-C1) |
|
RV-C1 |
NAT001* |
CG |
6944 |
EF077279 |
Kistler
et al., 2007 |
bases missing from 5' end |
|
|
|
|
|
|
|
|
Rhinovirus C2 (RV-C2) |
|
RV-C2 |
NAT045* |
CG |
7015 |
EF077280 |
Kistler
et al., 2007 |
bases missing from 5' end |
|
|
|
|
|
|
|
|
Rhinovirus C3 (RV-C3) |
|
RV-C3 |
QPM* |
CG |
7134 |
EF186077 |
McErlean et al., 2007 |
|
|
|
|
|
|
|
|
|
Rhinovirus C4 (RV-C4) |
|
RV-C4 |
024* |
CG |
7099 |
EF582385 |
Lau et al., 2007 |
Hong Kong |
|
|
|
|
|
|
|
|
Rhinovirus C5 (RV-C5) |
|
RV-C5 |
025* |
CG |
7114 |
EF582386 |
Lau et al., 2007 |
Hong Kong |
|
|
|
|
|
|
|
|
Rhinovirus C6 (RV-C6) |
|
RV-C6 |
026* |
CG |
7086 |
EF582387 |
Lau et al., 2007 |
Hong Kong |
|
RV-C6 |
p1264_s3778_1999 |
CG(p) |
6528 |
JN815245 |
Liggett et al.,
2014 |
|
|
|
|
|
|
|
|
|
Rhinovirus C7 (RV-C7) |
|
RV-C7 |
NY-074
(1078)* |
CG |
7072 |
DQ875932 |
Lamson et al., 2006;
Briese et al., unpub. |
|
|
RV-C7 |
p1028_sR3259_2010 |
CG(p) |
6423 |
JN798570 |
Liggett et al.,
2014 |
|
|
|
|
|
|
|
|
|
Rhinovirus C8 (RV-C8) |
|
RV-C8 |
N4* |
CG |
7107 |
GQ223227 |
Huang et al., 2009 |
China
2006 |
|
|
|
|
|
|
|
|
Rhinovirus C9 (RV-C9) |
|
RV-C9 |
N10* |
CG |
7111 |
GQ223228 |
Huang et al., 2009 |
China
2007 |
|
|
|
|
|
|
|
|
Rhinovirus C10 (RV-C10) |
|
RV-C10 |
QCE* |
CG |
7010 |
GQ323774 |
Arden et al., unpub. |
Aus,
2003 |
| RV-C10 |
|
VP1 |
831 |
EU935600 |
Faux et al., unpub. |
|
|
|
|
|
|
|
|
|
Rhinovirus C11 (RV-C11) |
|
RV-C11 |
CL-170085* |
CG |
7108 |
EU840952 |
Tapparel et al., 2009a,b |
Swi-2008 |
| RV-C11 |
|
VP1 |
775 |
FJ392317 |
Tapparel et al., 2009b |
|
|
|
|
|
|
|
|
|
Rhinovirus C12 (RV-C12) |
|
RV-C12 |
Resp_3922/07* |
VP1 |
|
HM236958 |
McIntyre et al., 2010 |
|
|
RV-C12 |
|
VP4/VP2(p) |
|
EF077264 |
Kistler
et al., 2007 |
|
|
|
|
|
|
|
|
|
Rhinovirus C13 (RV-C13) |
|
RV-C13 |
Resp_2951/06* |
VP1 |
|
HM236908 |
McIntyre et
al., 2010 |
|
| RV-C13 |
|
VP4/VP2(p) |
|
EU081795 |
Renwick et al.,
2007 |
|
|
|
|
|
|
|
|
|
Rhinovirus C14 (RV-C14) |
|
RV-C14 |
Resp_3090/06* |
VP1 |
|
HM236911 |
McIntyre et
al., 2010 |
|
|
RV-C14 |
|
VP4/VP2(p) |
|
EU081796 |
Renwick et al.,
2007 |
|
|
|
|
|
|
|
|
|
Rhinovirus C15 (RV-C15) |
|
RV-C15 |
Resp_4644/07* |
VP1 |
840 |
HM236963 |
McIntyre et
al., 2010 |
|
|
RV-C15 |
06-20 |
VP4/VP2(p) |
395 |
EU081800 |
Renwick et al.,
2007 |
|
|
RV-C15 |
W10 (USA, 2007) |
CG |
7119 |
GU219984 |
Bochkov et al., 2011 |
|
|
RV-C15 |
p1259_s2935_1999 |
CG(p) |
7001 |
JN837688 |
Liggett et al.,
2014 |
|
|
|
|
|
|
|
|
|
Rhinovirus C16 (RV-C16) |
|
RV-C16 |
Resp_5910/07* |
VP1 |
|
HM236944 |
McIntyre et
al., 2010 |
|
|
RV-C16 |
g2-4 |
VP4/VP2(p) |
|
EU081808 |
Renwick et al.,
2007 |
|
|
RV-C16 |
ID639T/TAN/2008 |
5'UTR(p)+P1 |
|
KR997882 |
L'Huillier et
al., 2015 |
|
|
|
|
|
|
|
|
|
Rhinovirus C17 (RV-C17) |
|
RV-C17 |
Resp_5145/07* |
VP1 |
|
HM236936 |
McIntyre et
al., 2010 |
|
|
RV-C17 |
06-582 |
VP4/VP2(p) |
|
EU081809 |
Renwick et al.,
2007 |
|
|
|
|
|
|
|
|
|
Rhinovirus C18 (RV-C18) |
|
RV-C18 |
Resp_3631/07* |
VP1 |
|
HM236918 |
McIntyre et
al., 2010 |
|
|
RV-C18 |
PNC41788/FIN/1996 |
VP4/VP2(p) |
|
EU590074 |
Savolainen-Kopra
et al., 2009a |
|
|
|
|
|
|
|
|
|
Rhinovirus C19 (RV-C19) |
|
RV-C19 |
CL-Fnp5* |
P1 |
3055 |
EU840728 |
Tapparel et al., 2009a |
Swi, 2003 |
|
RV-C19 |
|
VP4/VP2(p) |
|
EU697850 |
Briese et al.,
2008 |
|
|
|
|
|
|
|
|
|
Rhinovirus C20 (RV-C20) |
|
RV-C20 |
Resp_3995/07* |
VP1 |
|
HM236923 |
McIntyre et
al., 2010 |
|
|
RV-C20 |
|
VP4/VP2(p) |
|
EU697851 |
Briese et al.,
2008 |
|
|
|
|
|
|
|
|
|
Rhinovirus C21 (RV-C21) |
|
RV-C21 |
Resp_5071/07* |
VP1 |
|
HM236903 |
McIntyre et
al., 2010 |
|
|
RV-C21 |
|
VP4/VP2(p) |
|
EU752377 |
Miller et al.,
2009a |
|
|
|
|
|
|
|
|
|
Rhinovirus C22 (RV-C22) |
|
RV-C22 |
Resp_2748/06* |
VP1 |
|
HM236905 |
McIntyre et
al., 2010 |
|
|
RV-C22 |
|
VP4/VP2(p) |
|
EU752381 |
Miller et al.,
2009a |
|
|
RV-C22 |
3430-MY-10 |
CG |
7090 |
KJ675507 |
Chee et al.,
unpub. |
|
|
|
|
|
|
|
|
|
Rhinovirus C23 (RV-C23) |
|
RV-C23 |
Resp_3053/06* |
VP1 |
|
HM236901 |
McIntyre et
al., 2010 |
|
|
RV-C23 |
|
VP4/VP2(p) |
|
EU752424 |
Miller et al.,
2009a |
|
|
RV-C23 |
8713-MY-10 |
CG |
7112 |
KJ675506 |
Chee et al.,
unpub. |
|
|
|
|
|
|
|
|
|
Rhinovirus C24 (RV-C24) |
|
RV-C24 |
Resp_7147/07* |
VP1 |
|
HM236939 |
McIntyre et
al., 2010 |
|
|
RV-C24 |
|
VP4/VP2(p) |
|
EU752426 |
Miller et al.,
2009a |
|
|
|
|
|
|
|
|
|
Rhinovirus C25 (RV-C25) |
|
RV-C25 |
Resp_2832/06* |
VP1 |
|
HM236952 |
McIntyre et
al., 2010 |
|
|
RV-C25 |
|
VP4/VP2(p) |
|
EU752427 |
Miller et al.,
2009a |
|
|
RV-C25 |
LZ269 |
CG |
7139 |
JF317013 |
Yan et al.,
unpub. |
China: Feb-2007 |
|
|
|
|
|
|
|
|
Rhinovirus C26 (RV-C26) |
|
RV-C26 |
Resp_2514/06* |
VP1 |
|
HM236904 |
McIntyre et
al., 2010 |
|
|
RV-C26 |
|
VP4/VP2(p) |
|
EU752441 |
Miller et al.,
2009a |
|
|
|
|
|
|
|
|
|
Rhinovirus C27 (RV-C27) |
|
RV-C27 |
Resp_2784/06* |
VP1 |
|
HM236906 |
McIntyre et
al., 2010 |
|
|
RV-C27 |
|
VP4/VP2(p) |
|
GQ223122 |
Huang et al.,
2009 |
|
|
|
|
|
|
|
|
|
Rhinovirus C28 (RV-C28) |
|
RV-C28 |
Resp_3105/06* |
VP1 |
|
HM236954 |
McIntyre et
al., 2010 |
|
|
RV-C28 |
|
VP4/VP2(p) |
|
GQ223134 |
Huang et al.,
2009 |
|
|
|
|
|
|
|
|
|
Rhinovirus C29 (RV-C29) |
|
RV-C29 |
Resp_5345/07* |
VP1 |
|
HM236949 |
McIntyre et
al., 2010 |
|
|
RV-C29 |
|
VP4/VP2(p) |
|
FJ615699 |
Miller et al., 2009b |
|
|
|
|
|
|
|
|
|
Rhinovirus C30 (RV-C30) |
|
RV-C30 |
Resp_3898/07* |
VP1 |
|
HM236968 |
McIntyre et al., 2010 |
|
|
RV-C30 |
|
VP4/VP2(p) |
|
GQ476669 |
Wisdom et al., 2009b |
|
|
|
|
|
|
|
|
|
Rhinovirus C31 (RV-C31) |
|
RV-C31 |
Resp_4923/07* |
VP1 |
|
HM236964 |
McIntyre et al., 2010 |
|
|
RV-C31 |
|
VP4/VP2(p) |
|
GU294380 |
Wisdom et al.,
2009b |
|
|
|
|
|
|
|
|
|
Rhinovirus C32 (RV-C32) |
|
RV-C32 |
Resp_6131/07* |
VP1 |
|
HM236897 |
McIntyre et
al., 2010 |
|
|
RV-C32 |
|
VP4/VP2(p) |
|
GU294466 |
Wisdom et al.,
2009b |
|
|
|
|
|
|
|
|
|
Rhinovirus C33 (RV-C33) |
|
RV-C33 |
Resp_4917/07* |
VP1 |
|
HM236934 |
McIntyre et
al., 2010 |
|
|
RV-C33 |
|
VP4/VP2(p) |
|
GU294480 |
Wisdom et al.,
2009b |
|
|
|
|
|
|
|
|
|
Rhinovirus C34 (RV-C34) |
|
RV-C34 |
pico58* |
nearly CG |
|
n/a |
A.M. Lindberg
et al., unpub. |
|
|
RV-C34 |
LRTI-metagenomic-2
(Sweden/2004-05) |
P1(p)+2A |
2832 |
JF436926 |
Lysholm
et al., 2012 |
|
|
RV-C34 |
PNG7111-3625 (2007) |
VP1 |
852 |
JF519758 |
Chidlow et al.,
2012 |
|
|
RV-C34 |
Mex14/Mexico/2014 |
pp-coding |
6456 |
KM486097 |
Vazquez-Perez
et al., unpub. |
|
|
|
|
|
|
|
|
|
Rhinovirus C35 (RV-C35) |
|
RV-C35 |
LRTI-metagenomic-1 |
nearly CG |
6864 |
JF436925 |
Lysholm
et al., 2012 |
|
|
RV-C35 |
06-739b |
VP4+VP2(p) |
395 |
EU081790 |
Renwick et al.,
2007 |
|
|
|
|
|
|
|
|
|
Rhinovirus C36 (RV-C36) |
|
RV-C36 |
|
|
|
|
to be updated (see
here) |
|
|
|
|
|
|
|
|
|
Rhinovirus C37 (RV-C37) |
|
RV-C37 |
|
|
|
|
to be updated (see
here) |
|
|
|
|
|
|
|
|
|
Rhinovirus C38 (RV-C38) |
|
RV-C38 |
|
|
|
|
to be updated (see
here) |
|
|
|
|
|
|
|
|
|
Rhinovirus C39 (RV-C39) |
|
RV-C39 |
WA823M02 |
CG |
7115 |
JN205461 |
Chidlow et al.,
unpublished |
|
|
|
|
|
|
|
|
|
Rhinovirus C40 (RV-C40) |
|
RV-C40 |
p1221_sR1448_2009 |
CG(p) |
6613 |
JN815251 |
Liggett et al.,
2014 |
|
|
|
|
|
|
|
|
|
Rhinovirus C41 (RV-C41) |
|
RV-C41 |
2536/USA/2000 |
CG |
7115 |
KF958311 |
Nakagome et
al., 2014 |
|
|
RV-C41 |
g2-23 |
VP4+VP2(p) |
395 |
EU081803 |
Renwick et al.,
2007 |
|
|
RV-C41 |
Resp_9449/08 |
VP1 |
818 |
JF416323 |
McIntyre et al., pc 2011 |
|
|
RV-C41 |
Resp_10061/08 |
VP1 |
818 |
JF416305 |
McIntyre et al., pc 2011 |
|
|
|
|
|
|
|
|
|
Rhinovirus C42 (RV-C42) |
|
RV-C42 |
|
|
|
|
to be updated (see
here) |
|
RV-C42 |
1570-MY-10 |
CG |
7123 |
KJ675505 |
Chee et al.,
unpub. |
|
|
|
|
|
|
|
|
|
Rhinovirus C43 (RV-C43) |
|
RV-C43 |
p1281_s6410_1999 |
CG(p) |
6734 |
JN815249 |
Liggett et al.,
2014 |
|
|
RV-C43 |
06-230 |
VP4/VP2(p) |
395 |
EU081807 |
Renwick et al.,
2007 |
|
|
RV-C43 |
Resp_13229/08 |
VP1 |
815 |
JF416307 |
McIntyre &
Simmonds, unpub. |
|
|
RV-C43 |
Resp_14458/08 |
VP1 |
815 |
JF416309 |
McIntyre &
Simmonds, unpub. |
|
|
|
|
|
|
|
|
|
Rhinovirus C44 (RV-C44) |
|
RV-C44 |
PNC40168 |
VP4+VP2(p) |
414 |
EU590061 |
Savolainen-Kopra
et al., 2009a |
|
|
RV-C44 |
Resp_15588/09 |
VP1 |
833 |
JF416310 |
McIntyre &
Simmonds, unpub. |
|
|
|
|
|
|
|
|
|
Rhinovirus C45 (RV-C45) |
|
RV-C45 |
p1084_s3920_2000 |
CG(p) |
6847 |
JN837686 |
Liggett et al.,
2014 |
|
|
RV-C45 |
PNC40449 |
VP4/VP2(p) |
414 |
EU590064 |
Savolainen-Kopra
et al., 2009a |
|
|
RV-C45 |
Resp_13958/08 |
VP1 |
815 |
JF416308 |
McIntyre &
Simmonds, unpub. |
|
|
RV-C45 |
cpz1-2013/UGA |
CG(p) |
6972 |
KY624849 |
Scully et al.,
2018 |
chimpanzee |
|
|
|
|
|
|
|
|
Rhinovirus C46 (RV-C46) |
|
RV-C46 |
KR2315 |
VP4+VP2(p) |
441 |
FJ869950 |
Calvo et al.,
2009 |
|
|
RV-C46 |
Resp_5153/07 |
VP1 |
815 |
JF416318 |
McIntyre &
Simmonds, unpub. |
|
| VP4+VP2(p) |
414 |
GU294446 |
Wisdom et al.,
2009 |
|
|
RV-C46 |
Resp_5154/07 |
VP1 |
815 |
JF416319 |
McIntyre &
Simmonds, unpub. |
|
| VP4+VP2(p) |
414 |
GU294447 |
Wisdom et al.,
2009 |
|
|
|
|
|
|
|
|
|
Rhinovirus C47 (RV-C47) |
|
RV-C47 |
K1091 301104 |
VP4+VP2(p) |
414 |
GQ466482 |
Savolainen-Kopra
et al., 2009c |
|
|
RV-C47 |
PNG7254-3947 |
VP1 |
837 |
JF519760 |
Chidlow et al.,
2012 |
|
| VP4+VP2(p) |
429 |
JF519761 |
Chidlow et al.,
2012 |
|
|
|
|
|
|
|
|
|
Rhinovirus C48 (RV-C48) |
|
RV-C48 |
PNG7293-3193 |
VP1 |
840 |
JF519762 |
Chidlow et al.,
2012 |
|
| VP4+VP2(p) |
433 |
JF519763 |
Chidlow et al.,
2012 |
|
|
|
|
|
|
|
|
|
Rhinovirus C49 (RV-C49) |
|
RV-C49 |
p1277_s6237_2000 |
CG(p) |
6801 |
JN798566 |
Liggett et al.,
2014 |
|
|
RV-C49 |
p1082_s6463_2000 |
CG(p) |
6416 |
JN798568 |
Liggett et al.,
2014 |
|
|
|
|
|
|
|
|
|
Rhinovirus C50 (RV-C50) |
|
RV-C50 |
SG1/AUS/2008 |
VP3(p)
to (p) |
953 |
JQ739202 |
Mackay et al.,
unpub. |
|
| CG(p) |
6928 |
KF688606 |
Mackay et al.,
unpub. |
|
|
|
|
|
|
|
|
|
Rhinovirus C51 (RV-C51) |
|
RV-C51 |
LZ508/China/2007 |
CG |
7154 |
JF317015 |
Yan et al.,
unpub. |
|
|
RV-C51 |
JAL-1/USA/2010 |
CG |
7155 |
JX291115 |
Lednicky & Loeb,
unpub. |
|
|
RV-C51 |
RV-CO-1368 |
VP4+VP2(p) |
415 |
EU743925 |
Dominguez et
al. (2008) |
|
|
|
|
|
|
|
|
|
Rhinovirus C52 (RV-C52) |
|
RV-C52 |
D1880-V1 |
VP4+VP2(p) |
431 |
n/a |
Zlateva et al., unpub. |
|
| VP3(p)+VP1+2A(p) |
1287 |
n/a |
Zlateva et al., unpub. |
|
|
|
|
|
|
|
|
|
Rhinovirus C53 (RV-C53) |
|
RV-C53 |
H1380-V1 |
VP4+VP2(p) |
440 |
n/a |
Zlateva et al., unpub. |
|
| VP3(p)+VP1+2A(p) |
1324 |
n/a |
Zlateva et al., unpub. |
|
|
|
|
|
|
|
|
|
Rhinovirus C54 (RV-C54) |
|
RV-C54 |
D3490/SPA/2009 |
CG |
7054 |
KP282614 |
Jazaeri Farsani
et al., 2015 |
|
|
|
|
|
|
|
|
|
Rhinovirus C55 (RV-C55) |
|
RV-C55 |
ID529T/TAN/2008 |
5'UTR-2A |
3124 |
KR997885 |
L'Huillier et
al., 2015 |
|
|
|
|
|
|
|
|
|
Rhinovirus C56 (RV-C56) |
|
RV-C56 |
JPN/Kumamoto1/2009 |
VP2-VP1 |
2343 |
LC004772 |
Kuroda et al.,
2015 |
|
|
|
|
|
|
|
|
|
Rhinovirus C57 (RV-C57) |
|
RV-C57 |
7383-MY-10 |
CG |
7073 |
KP890662 |
Khaw et al.,
2016 |
|
|
|
|
|
|
|
|
|
|
waiting to be placed in the above table... |
| Virus |
Strain |
Region |
Length |
Accession No. |
Reference |
Comments |
|
RV-? |
QPM-001 |
VP4 |
198 |
EF512632 |
McErlean et al., 2007 |
|
|
VP2 |
790 |
EF512649 |
McErlean et al., 2007 |
|
|
VP1 |
825 |
EF512666 |
McErlean et al., 2007 |
|
|
RV-? |
QPM-002 |
VP4 |
198 |
EF512633 |
McErlean et al., 2007 |
|
|
VP2 |
790 |
EF512663 |
McErlean et al., 2007 |
|
|
VP1 |
825 |
EF512667 |
McErlean et al., 2007 |
|
|
RV-? |
QPM-003 |
VP4 |
198 |
EF512639 |
McErlean et al., 2007 |
|
|
VP2 |
790 |
EF512655 |
McErlean et al., 2007 |
|
|
VP1 |
825 |
EF512678 |
McErlean et al., 2007 |
|
|
RV-? |
QPM-004 |
VP4 |
198 |
EF512643 |
McErlean et al., 2007 |
|
|
VP2 |
790 |
EF512653 |
McErlean et al., 2007 |
|
|
VP1 |
825 |
EF512670 |
McErlean et al., 2007 |
|
|
RV-? |
QPM-005 |
VP4 |
198 |
EF512642 |
McErlean et al., 2007 |
|
|
VP2 |
790 |
EF512665 |
McErlean et al., 2007 |
|
|
VP1 |
825 |
EF512668 |
McErlean et al., 2007 |
|
|
RV-? |
QPM-006 |
VP4 |
198 |
EF512644 |
McErlean et al., 2007 |
|
|
VP2 |
790 |
EF512654 |
McErlean et al., 2007 |
|
|
VP1 |
825 |
EF512673 |
McErlean et al., 2007 |
|
|
RV-? |
QPM-007 |
VP4 |
198 |
EF512634 |
McErlean et al., 2007 |
|
|
VP2 |
790 |
EF512657 |
McErlean et al., 2007 |
|
|
VP1 |
825 |
EF512669 |
McErlean et al., 2007 |
|
|
RV-? |
QPM-008 |
VP4 |
198 |
EF512636 |
McErlean et al., 2007 |
|
|
VP2 |
790 |
EF512652 |
McErlean et al., 2007 |
|
|
VP1 |
825 |
EF512680 |
McErlean et al., 2007 |
|
|
RV-? |
QPM-009 |
VP4 |
198 |
EF512648 |
McErlean et al., 2007 |
|
|
VP2 |
790 |
EF512664 |
McErlean et al., 2007 |
|
|
VP1 |
825 |
EF512682 |
McErlean et al., 2007 |
|
|
RV-? |
QPM-010 |
VP4 |
198 |
EF512646 |
McErlean et al., 2007 |
|
|
VP2 |
790 |
EF512659 |
McErlean et al., 2007 |
|
|
VP1 |
825 |
EF512672 |
McErlean et al., 2007 |
|
|
RV-? |
QPM-011 |
VP4 |
198 |
EF512637 |
McErlean et al., 2007 |
|
|
VP2 |
790 |
EF512650 |
McErlean et al., 2007 |
|
|
VP1 |
825 |
EF512671 |
McErlean et al., 2007 |
|
|
RV-? |
QPM-012 |
VP4 |
198 |
EF512641 |
McErlean et al., 2007 |
|
|
VP2 |
790 |
EF512651 |
McErlean et al., 2007 |
|
|
VP1 |
825 |
EF512675 |
McErlean et al., 2007 |
|
|
RV-? |
QPM-013 |
VP4 |
198 |
EF512640 |
McErlean et al., 2007 |
|
|
VP2 |
790 |
EF512656 |
McErlean et al., 2007 |
|
|
VP1 |
825 |
EF512679 |
McErlean et al., 2007 |
|
|
RV-? |
QPM-014 |
VP4 |
198 |
EF512647 |
McErlean et al., 2007 |
|
|
VP2 |
790 |
EF512660 |
McErlean et al., 2007 |
|
|
VP1 |
825 |
EF512681 |
McErlean et al., 2007 |
|
|
RV-? |
QPM-015 |
VP4 |
198 |
EF512645 |
McErlean et al., 2007 |
|
|
VP2 |
790 |
EF512662 |
McErlean et al., 2007 |
|
|
VP1 |
825 |
EF512674 |
McErlean et al., 2007 |
|
|
RV-? |
QPM-016 |
VP4 |
198 |
EF512635 |
McErlean et al., 2007 |
|
|
VP2 |
790 |
EF512658 |
McErlean et al., 2007 |
|
|
VP1 |
825 |
EF512677 |
McErlean et al., 2007 |
|
|
RV-? |
QPM-17 |
VP4 |
198 |
EF512638 |
McErlean et al., 2007 |
|
|
VP2 |
790 |
EF512661 |
McErlean et al., 2007 |
|
|
VP1 |
825 |
EF512676 |
McErlean et al., 2007 |
|
| RV-? |
NY-041 (1044) |
VP4 |
201 |
DQ875921 |
Lamson et al., 2006 |
|
| RV-? |
NY-063 (1067) |
VP4 |
201 |
DQ875924 |
Lamson et al., 2006 |
|
| RV-? |
NY-1085 (2005) |
VP4 |
201 |
DQ875925 |
Lamson et al., 2006 |
|
| RV-? |
NY-042 (1045) |
VP4 |
201 |
DQ875926 |
Lamson et al., 2006 |
|
| RV-? |
NY-060 (1064) |
VP4 |
201 |
DQ875928 |
Lamson et al., 2006 |
|
| RV-? |
NY-003 (1003) |
VP4 |
201 |
DQ875929 |
Lamson et al., 2006 |
|
| RV-? |
NY-028 (1031) |
VP4 |
201 |
DQ875931 |
Lamson et al., 2006 |
|
| RV-? |
NAT009 |
VP4/VP2(p) |
|
EF077237 |
Kistler
et al., 2007 |
|
| RV-? |
NAT018 |
VP4/VP2(p) |
|
EF077238 |
Kistler
et al., 2007 |
|
| RV-? |
NAT051 |
VP4/VP2(p) |
|
EF077239 |
Kistler
et al., 2007 |
|
| RV-? |
NAT028 |
VP4/VP2(p) |
|
EF077240 |
Kistler
et al., 2007 |
|
| RV-? |
NAT021 |
VP4/VP2(p) |
|
EF077241 |
Kistler
et al., 2007 |
|
| RV-? |
NAT038 |
VP4/VP2(p) |
|
EF077242 |
Kistler
et al., 2007 |
|
| RV-? |
NAT040 |
VP4/VP2(p) |
|
EF077243 |
Kistler
et al., 2007 |
|
| RV-? |
NAT046 |
VP4/VP2(p) |
|
EF077244 |
Kistler
et al., 2007 |
|
| RV-? |
NAT053 |
VP4/VP2(p) |
|
EF077245 |
Kistler
et al., 2007 |
|
| RV-? |
NAT047 |
VP4/VP2(p) |
|
EF077246 |
Kistler
et al., 2007 |
|
| RV-? |
NAT049 |
VP4/VP2(p) |
|
EF077247 |
Kistler
et al., 2007 |
|
| RV-? |
NAT025 |
VP4/VP2(p) |
|
EF077248 |
Kistler
et al., 2007 |
|
| RV-? |
NAT026 |
VP4/VP2(p) |
|
EF077249 |
Kistler
et al., 2007 |
|
| RV-? |
NAT008 |
VP4/VP2(p) |
|
EF077250 |
Kistler
et al., 2007 |
|
| RV-? |
NAT023 |
VP4/VP2(p) |
|
EF077251 |
Kistler
et al., 2007 |
|
| RV-? |
NAT001 |
VP4/VP2(p) |
|
EF077252 |
Kistler
et al., 2007 |
|
| RV-? |
NAT045 |
VP4/VP2(p) |
|
EF077253 |
Kistler
et al., 2007 |
|
| RV-? |
NAT063 |
VP4/VP2(p) |
|
EF077254 |
Kistler
et al., 2007 |
|
| RV-? |
NAT065 |
VP4/VP2(p) |
|
EF077255 |
Kistler
et al., 2007 |
|
| RV-? |
NAT069 |
VP4/VP2(p) |
|
EF077256 |
Kistler
et al., 2007 |
|
| RV-? |
NAT080 |
VP4/VP2(p) |
|
EF077257 |
Kistler
et al., 2007 |
|
| RV-? |
NAT087 |
VP4/VP2(p) |
|
EF077258 |
Kistler
et al., 2007 |
|
| RV-? |
NAT088 |
VP4/VP2(p) |
|
EF077259 |
Kistler
et al., 2007 |
|
| RV-? |
NAT059 |
VP4/VP2(p) |
|
EF077260 |
Kistler
et al., 2007 |
|
| RV-? |
NAT060 |
VP4/VP2(p) |
|
EF077261 |
Kistler
et al., 2007 |
|
| RV-? |
NAT066 |
VP4/VP2(p) |
|
EF077262 |
Kistler
et al., 2007 |
|
| RV-? |
NAT070 |
VP4/VP2(p) |
|
EF077263 |
Kistler
et al., 2007 |
|
| RV-? |
NAT083 |
VP4/VP2(p) |
|
EF077264 |
Kistler
et al., 2007 |
|
| RV-? |
NAT084 |
VP4/VP2(p) |
|
EF077265 |
Kistler
et al., 2007 |
|
| RV-? |
NAT057 |
VP4/VP2(p) |
|
EF077266 |
Kistler
et al., 2007 |
|
| RV-? |
NAT061 |
VP4/VP2(p) |
|
EF077267 |
Kistler
et al., 2007 |
|
| RV-? |
NAT062 |
VP4/VP2(p) |
|
EF077268 |
Kistler
et al., 2007 |
|
| RV-? |
NAT089 |
VP4/VP2(p) |
|
EF077269 |
Kistler
et al., 2007 |
|
| RV-? |
NAT024 |
VP4/VP2(p) |
446 |
EF077270 |
Kistler
et al., 2007 |
|
| RV-? |
NAT037 |
VP4/VP2(p) |
561 |
EF077281 |
Kistler
et al., 2007 |
|
| RV-? |
026-001 (Aus, 2002) |
VP1 |
825 |
EU935601 |
Faux et al., unpub. |
|
| RV-? |
QIM-001 |
VP1(p) |
714 |
FJ770372 |
Faux & Mackay, unpub. |
|
| |
|
|
|
|
|
|
CG = complete
genome
(p) = partial gene sequence |
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