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Unassigned KoV seqs
Kobuviruses from Vietnam

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Unassigned
  Genus: Kobuvirus

Species: unassigned

Type: Eidolon helvum kobuvirus (EhKV)  
5' UTR L VP0 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: sheep kobuvirus (ShKV)  
5' UTR L VP0 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: Norway rat kobuvirus 2 (NrKoV-2)  
5' UTR L VP0 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Type: civet kobuvirus (CiKov)  
5' UTR L VP0 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR

(White areas indicate genes which haven't yet been sequenced completely; grey areas are where only partial sequences exist)

Virus Strain Region

Length

Accession No. Reference Comments

Murine kobuvirus ? (MuKV-?)

MuKV-? TF5WM/HUN/2010 3D(p)+3'UTR 941 JQ408726 Farkas et al., 2012 Apodemus agrarius
             

Eidolon helvum kobuvirus (EhKV) (from Straw-coloured fruit bat)
       - <70% nt id to other kobuviruses

EhKV Ghana/181630/2009 5'UTR(p)-VP0(p) 1120 JX885611 Baker et al., 2013  
EhKV 185867 L(p)-VP0(p) 608   Baker et al., 2013  
EhKV 7448 L(p)-VP0(p) 593   Baker et al., 2013  
EhKV 698 3A(p)-3B(p) 295   Baker et al., 2013  
             

Sheep kobuvirus (ShKV) - <80% nt id with other kobuviruses

ShKV sheep/BRA03/2010/Brazil 3D(p) 217 HQ877626 Barry et al., 2011  
ShKV sheep/BRA08/2010/Brazil 3D(p) 217 HQ877627 Barry et al., 2011  
ShKV sheep/BRA11/2010/Brazil 3D(p) 217 HQ877628 Barry et al., 2011  
             

Unassigned bovine-like kobuvirus in a Korean black goat
   (identical to some bovine kobuviruses)

? goat/08KG680/KOR/2010 3D(p) 454 JF714211 Lee et al., 2012  
             

Norway rat kobuvirus 2 (NrKoV-2)

NrKoV-2 rat/NYC-D21/USA/2013 3D(p) 951 KJ950910 Firth et al., 2014  
NrKoV-2 rat/NYC-D21a/USA/2013 VP1+ 1340 KJ950970 Firth et al., 2014  
             

Civet kobuvirus (CiKoV) - Aichivirus A

CiKoV civet/BS14-178H6/Vietnam/2014 VP1 831 KT944174 Nguyen et al., unpub.  
             

Related short sequences from laboratory animals in India

  GP13/India/2017 3D(p) 206 MF508650 Sircar et al., unpub. Cavia porcellus
  M1/India/2017 3D(p) 217 MF508651 Sircar et al., unpub. Mus musculus
  M4/India/2017 3D(p) 217 MF508652 Sircar et al., unpub. Mus musculus
  GP12/India/2017 3D(p) 204 MF508655 Sircar et al., unpub. Cavia porcellus
             
CG = complete genome
(p) = partial gene sequence

References

Baker, K.S., Todd, S., Marsh, G.A., Crameri, G., Barr, J., Kamins, A.O., Peel, A.J., Yu, M., Hayman, D.T., Nadjm, B., Mtove, G., Amos, B., Reyburn, H., Nyarko, E., Suu-Ire, R., Murcia, P.R., Cunningham, A.A., Wood, J.L. and Wang, L.F. (2013). Novel, potentially zoonotic paramyxoviruses from the African straw-colored fruit bat Eidolon helvum. J. Virol. 87: 1348-58.

Barry, A.F., Ribeiro, J., Alfieri, A.F., van der Poel, W.H. and Alfieri, A.A. (2011). First detection of kobuvirus in farm animals in Brazil and the Netherlands. Infect. Genet. Evol. 11: 1811-1814.

Farkas, T., Fey, B., Keller, G., Martella, V. and Egyed, L. (2012). Molecular detection of novel astroviruses in wild and laboratory mice. Virus Genes 45: 518-525.

Firth, C., Bhat, M., Firth, M.A., Williams, S.H., Frye, M.J., Simmonds, P., Conte, J.M., Ng, J., Garcia, J., Bhuva, N.P., Lee, B., Che, X., Quan, P.L. and Lipkin, W.I. (2014). Detection of zoonotic pathogens and characterization of novel viruses carried by commensal Rattus norvegicus in New York City. MBio 5(5). pii: e01933-14.

Lee, M.H., Jeoung, H.Y., Lim, J.A., Song, J.Y., Song, D.S. and An, D.J. (2012). Kobuvirus in South Korean black goats. Virus Genes. 45: 186-189. [Epub 2012 Apr 12]

 

 
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