| |
Genus: Kobuvirus
Species: unassigned
| Type: Eidolon helvum
kobuvirus (EhKV) |
|
| 5'
UTR |
L |
VP0 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: sheep kobuvirus (ShKV) |
|
| 5'
UTR |
L |
VP0 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: Norway rat kobuvirus 2 (NrKoV-2) |
|
| 5'
UTR |
L |
VP0 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
| Type: civet kobuvirus (CiKov) |
|
| 5'
UTR |
L |
VP0 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3'
UTR |
|
(White areas indicate genes which haven't yet been
sequenced completely;
grey areas are where only partial sequences exist)
| Virus |
Strain |
Region |
Length
|
Accession No. |
Reference |
Comments |
|
|
| MuKV-? |
TF5WM/HUN/2010 |
3D(p)+3'UTR |
941 |
JQ408726 |
Farkas
et al., 2012 |
Apodemus agrarius |
|
|
|
|
|
|
|
|
Eidolon helvum kobuvirus (EhKV) (from Straw-coloured fruit bat)
- <70% nt id to other kobuviruses
|
|
EhKV |
Ghana/181630/2009 |
5'UTR(p)-VP0(p) |
1120 |
JX885611 |
Baker et al.,
2013 |
|
|
EhKV |
185867 |
L(p)-VP0(p) |
608 |
|
Baker et al.,
2013 |
|
|
EhKV |
7448 |
L(p)-VP0(p) |
593 |
|
Baker et al.,
2013 |
|
|
EhKV |
698 |
3A(p)-3B(p) |
295 |
|
Baker et al.,
2013 |
|
|
|
|
|
|
|
|
|
Sheep kobuvirus (ShKV) - <80% nt id with other kobuviruses
|
| ShKV |
sheep/BRA03/2010/Brazil |
3D(p) |
217 |
HQ877626 |
Barry et al.,
2011 |
|
| ShKV |
sheep/BRA08/2010/Brazil |
3D(p) |
217 |
HQ877627 |
Barry et al.,
2011 |
|
| ShKV |
sheep/BRA11/2010/Brazil |
3D(p) |
217 |
HQ877628 |
Barry et al.,
2011 |
|
| |
|
|
|
|
|
|
Unassigned bovine-like kobuvirus
in a Korean black goat
(identical to some bovine
kobuviruses)
|
| ? |
goat/08KG680/KOR/2010 |
3D(p) |
454 |
JF714211 |
Lee et al.,
2012 |
|
| |
|
|
|
|
|
|
Norway rat kobuvirus 2 (NrKoV-2)
|
| NrKoV-2 |
rat/NYC-D21/USA/2013 |
3D(p) |
951 |
KJ950910 |
Firth et al.,
2014 |
|
| NrKoV-2 |
rat/NYC-D21a/USA/2013 |
VP1+ |
1340 |
KJ950970 |
Firth et al.,
2014 |
|
| |
|
|
|
|
|
|
Civet kobuvirus (CiKoV) - Aichivirus A
|
| CiKoV |
civet/BS14-178H6/Vietnam/2014 |
VP1 |
831 |
KT944174 |
Nguyen et al., unpub. |
|
| |
|
|
|
|
|
|
Related short sequences from laboratory animals in India
|
|
|
GP13/India/2017 |
3D(p) |
206 |
MF508650 |
Sircar et al.,
unpub. |
Cavia
porcellus |
|
|
M1/India/2017 |
3D(p) |
217 |
MF508651 |
Sircar et al.,
unpub. |
Mus
musculus |
|
|
M4/India/2017 |
3D(p) |
217 |
MF508652 |
Sircar et al.,
unpub. |
Mus
musculus |
|
|
GP12/India/2017 |
3D(p) |
204 |
MF508655 |
Sircar et al.,
unpub. |
Cavia
porcellus |
|
|
|
|
|
|
|
|
CG = complete genome
(p) = partial gene sequence |
Baker, K.S., Todd, S., Marsh, G.A., Crameri, G., Barr, J., Kamins, A.O., Peel,
A.J., Yu, M., Hayman, D.T., Nadjm, B., Mtove, G., Amos, B., Reyburn, H., Nyarko,
E., Suu-Ire, R., Murcia, P.R., Cunningham, A.A., Wood, J.L. and Wang, L.F.
(2013). Novel, potentially zoonotic paramyxoviruses from the African straw-colored
fruit bat Eidolon helvum. J. Virol. 87: 1348-58.
Barry, A.F., Ribeiro, J., Alfieri, A.F., van der Poel, W.H. and Alfieri, A.A.
(2011). First detection of kobuvirus in farm animals in Brazil and the
Netherlands. Infect. Genet. Evol. 11: 1811-1814.
Farkas, T., Fey, B., Keller, G., Martella, V. and Egyed, L.
(2012). Molecular detection of novel astroviruses in wild and
laboratory mice. Virus Genes 45: 518-525.
Firth, C., Bhat, M., Firth, M.A., Williams, S.H., Frye, M.J., Simmonds, P.,
Conte, J.M., Ng, J., Garcia, J., Bhuva, N.P., Lee, B., Che, X., Quan, P.L. and
Lipkin, W.I. (2014). Detection of zoonotic pathogens and characterization of
novel viruses carried by commensal Rattus norvegicus in New York City.
MBio 5(5). pii: e01933-14.
Lee, M.H., Jeoung, H.Y., Lim, J.A., Song, J.Y., Song, D.S. and An, D.J. (2012).
Kobuvirus in South Korean black goats. Virus Genes. 45: 186-189. [Epub 2012 Apr
12]
|
