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Unassigned
 

Genus: Enterovirus

Species: Enterovirus A

Serotype: Coxsackievirus A2 (CVA2)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Coxsackievirus A3 (CVA3)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Coxsackievirus A4 (CVA4)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Coxsackievirus A5 (CVA5)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Coxsackievirus A6 (CVA6)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Coxsackievirus A7 (CVA7)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Coxsackievirus A8 (CVA8)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Coxsackievirus A10 (CVA10)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Coxsackievirus A12 (CVA12)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Coxsackievirus A14 (CVA14)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Coxsackievirus A16 (CVA16)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Enterovirus A71 (EV-A71)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Enterovirus A76 (EV-A76)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Enterovirus A89 (EV-A89)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Enterovirus A90 (EV-A90)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Enterovirus A91 (EV-A91)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Enterovirus A92 (EV-A92)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Enterovirus A114 (EV-A114)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Enterovirus A119 (EV-A119)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Enterovirus A120 (EV-A120)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Enterovirus A121 (EV-A121)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Enterovirus A122 (EV-A122)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Enterovirus A123 (EV-A123)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Enterovirus A124 (EV-A124)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR
Serotype: Enterovirus A125 (EV-A125)  
5' UTR VP4 VP2 VP3 VP1 2A 2B 2C 3A 3B 3C 3D 3' UTR

(White areas indicate genes which haven't yet been sequenced completely; grey areas are where only partial sequences exist)

References

Virus Strain Region

Length

Accession No.

 Reference Comments

Coxsackievirus A2 (CVA2)
CVA2 Fleetwood* (Delaware/47) P1+2A 3024 L28146 Pöyry et al., 1994  
3D(p) 390 X87585 Pulli et al., 1995  
             

Coxsackievirus A3 (CVA3)
CVA3 J.Ol. (Olson)* (New York/48) 5'NCR(p),1AB(p),3D(p),3'NCR(p) 198,210,390,68 X87586 Pulli et al., 1995  
VP1 882 AF081294 Oberste et al., 1999  
             

Coxsackievirus A4 (CVA4)
CVA4 High Point* (North Carolina/50) 3'NCR(p) 66 X87587 Pulli et al., 1995  
VP2(p) ? ? Oberste et al., 1998  
VP1 915 AF081295 Oberste et al., 1999  
VP4+VP2(p) 561 AF117695 M.N. Mulders and T. Hovi, unpublished data  
             

Coxsackievirus A5 (CVA5)
CVA5 G.S. (Swartz)* (New York/50) 5'NCR(p),1AB(p),3D(p),3'NCR(p) 199,210,390,68 X87588 Pulli et al., 1995  
VP1 885 AF081296 Oberste et al., 1999  
             

Coxsackievirus A6 (CVA6)
CVA6 Gdula* VP2(p) ? ? Oberste et al., 1998  
VP1 915 AF081297 Oberste et al., 1999  
             

Coxsackievirus A7 (CVA7)
CVA7 AB-IV (Russian) 5'NCR(p),1AB(p),3D(p),3'NCR(p) 200,210,390,68 X87589 Pulli et al., 1995  
VP1 888 AF081298 Oberste et al., 1999  
CVA7 Parker 5'NCR(p) 254 AF068879 Muir et al., unpublished  
VP4+VP2(p) 576 AF117696 M.N. Mulders and T. Hovi, unpublished data  
             

Coxsackievirus A8 (CVA8)
CVA8 C.D. (Donovan)* (New York/49) 5'NCR(p),1AB(p),3'NCR(p) 199,210,68 X87590 Pulli et al., 1995  
VP1 882 AF081299 Oberste et al., 1999  

Coxsackievirus A10 (CVA10)
CVA10 M.K. (Kowalik)* (New York/50) 1AB(p),3D(p) 210,390 X87591 Pulli et al., 1995  
VP1 894 AF081300 Oberste et al., 1999  
             

Coxsackievirus A12 (CVA12)
CVA12 Texas 12* (Texas/48) 5'NCR(p),3D(p),3'NCR(p) 199,390,68 X87593 Pulli et al., 1995  
VP2(p) ? ? Oberste et al., 1998  
VP1 888 AF081302 Oberste et al., 1999  
             

Coxsackievirus A14 (CVA14)
CVA14 G-14* (South Africa/50) 5'NCR(p),1AB(p),3D(p),3'NCR(p) 199,210,390,66 X87595 Pulli et al., 1995  
VP2(p) ? ? Oberste et al., 1998  
VP1 888 AF081304 Oberste et al., 1999  
             

Coxsackievirus A16 (CVA16)
CVA16 G-10* (South Africa/51) CG 7413 U05876 Pöyry et al., 1994  
CVA16 Tainan/5079/98 (Taiwan) CG 7410 AF177911 Yan et al., 2001  
CVA16 An 5'NCR(p) ~281 N/A L. Kinnunen, unpub.  
CVA16 Koist 5'NCR(p) ~477 N/A L. Kinnunen, unpub.  
CVA16 Ordin 5'NCR(p) ~450 N/A L. Kinnunen, unpub.  
CVA16 Netherlands/86 1AB(p),3D(p) ? N/A Pulli et al., 1995  
CVA16 Netherlands/87 1AB(p),3D(p) ? N/A Pulli et al., 1995  
CVA16 Ohio/89 1AB(p),3D(p) ? N/A Pulli et al., 1995  
CVA16 Washington/90 1AB(p),3D(p) ? N/A Pulli et al., 1995  
CVA16 Finland/91 1AB(p),3D(p) ? N/A Pulli et al., 1995  
             

Enterovirus A71 (EV-A71)
Enterovirus A71
             

Enterovirus A76 (EV-A76)
EV-A76 FRA91-10369* CG 7438 AY697458 Oberste et al., 2005a  
EV-A76 LM1677 (Cameroon, 2006)
(chimpanzee, Pan troglodytes)		 5' UTR(p) 427 JF416927 Harvala et al., 2011  
VP4+VP2(p) 404 JF416930
VP3(p)+VP1+2A(p) 1024 JF416933
3D(p) 265 JF416936
EV-A76 IGIB-NIV-02 (India, 2010) CG 7376 JN974483 Patowary et al., unpub.  
             

Enterovirus A89 (EV-A89)
EV-A89 BAN00-10359* CG 7429 AY697459 Oberste et al., 2005a  
EV-A89 BAN00-10360 P1 2592 AY697472 Oberste et al., 2005a
3D(p) 748 AY697500 Oberste et al., 2005a  
EV-A89 chimpanzee/MB6249/Cameroon VP3(p)+VP1+2A(p) 1266 KF040078 Simmonds et al., unpub.  
EV-A89 chimpanzee/MB6250/Cameroon VP3(p)+VP1+2A(p) 1266 KF040079 Simmonds et al., unpub.  
             

Enterovirus A90 (EV-A90)
EV-A90 BAN99-10399* CG 7425 AY697460 Oberste et al., 2005a  
EV-A90 F950027 CG 7438 AY773285 van den Broek et al., unpub.  
EV-A90 CAM1956 CG 7425 AB192877 Shimizu et al., unpub.  
EV-A90 BAN99-10260 VP1   N/A Oberste et al., unpublished  
             

Enterovirus A91 (EV-A91)
EV-A91 BAN00-10406* CG 7427 AY697461 Oberste et al., 2005a  
EV-A91 BAN00-10262 VP1   N/A Oberste et al., unpublished  
EV-A91 BAN99-10407 P1 2595 AY697476 Oberste et al., 2005a  
3D(p) 747 AY697507 Oberste et al., 2005a  
             

Enterovirus A92 (EV-A92)
EV-A92 GA01-10263 VP1   N/A Oberste et al., unpublished  
EV-A92 USA/GA99-934 VP1(p) 291 EU194514 Nix et al., 2008  
3D(p) 609 EU194488 Nix et al., 2008  
EV-A92 USA/GA99-OPE228 VP1(p) 255 EU194515 Nix et al., 2008  
3D(p) 525 EU194489 Nix et al., 2008  
EV-A92 USA/GA99-PJf-1 VP1(p) 295 EU194516 Nix et al., 2008  
3D(p) 582 EU194490 Nix et al., 2008  
EV-A92 USA/GA99-RBz-4 VP1(p) 282 EU194519 Nix et al., 2008  
3D(p) 624 EU194493 Nix et al., 2008  
EV-A92 USA/GA99-RFk-5 VP1(p) 291 EU194521 Nix et al., 2008  
3D(p) 624 EU194495 Nix et al., 2008  
EV-A92 USA/GA99-RFl-5 VP1(p) 285 EU194522 Nix et al., 2008  
3D(p) 618 EU194496 Nix et al., 2008  
EV-A92 USA/GA2000-RGg-6 VP1(p) 295 EU194523 Nix et al., 2008
3D(p) 617 EU194497 Nix et al., 2008  
EV-A92 USA/GA99-RHa-2 VP1(p) 295 EU194524 Nix et al., 2008  
3D(p) 624 EU194498 Nix et al., 2008  
EV-A92 USA/GA99-RJg-7* CG 7379 EF667344 Oberste et al., 2008  
VP1(p) 285 EU194526 Nix et al., 2008  
3D(p) 624 EU194500 Nix et al., 2008  
EV-A92 USA/GA99-RJo-3 VP1(p) 239 EU194527 Nix et al., 2008  
3D(p) 624 EU194501 Nix et al., 2008  
EV-A92 USA/GA99-RKk-6 VP1(p) 216 EU194528 Nix et al., 2008  
3D(p) 624 EU194502 Nix et al., 2008  
EV-A92 USA/GA99-RKp-5 VP1(p) 282 EU194529 Nix et al., 2008  
3D(p) 595 EU194503 Nix et al., 2008  
EV-A92 USA/GA99-RLq VP1(p) 297 EU194530 Nix et al., 2008  
3D(p) 624 EU194504 Nix et al., 2008  
EV-A92 USA/GA99-RMm-5 VP1(p) 291 EU194531 Nix et al., 2008
3D(p) 624 EU194505 Nix et al., 2008  
EV-A92 USA/GA99-RNr-5 VP1(p) 285 EU194534 Nix et al., 2008  
3D(p) 581 EU194508 Nix et al., 2008  
EV-A92 USA/GA99-RQd-6 VP1(p) 295 EU194535 Nix et al., 2008  
3D(p) 624 EU194509 Nix et al., 2008  
EV-A92 USA/GA99-RTg-5 VP1(p) 262 EU194536 Nix et al., 2008  
3D(p) 624 EU194510 Nix et al., 2008  
EV-A92 USA/GA99-FOi VP1(p) 194 EU194540 Nix et al., 2008  
EV-A92 USA/GA99-PAi-1 VP1(p) 297 EU194542 Nix et al., 2008  
EV-A92 USA/GA99-RHp-4 VP1(p) 297 EU194545 Nix et al., 2008  
EV-A92 USA/GA99-RUs-4 VP1(p) 297 EU194549 Nix et al., 2008  
EV-A92 rhmk/WUHARV-EV-1 CG 7273 JX627570 Handley et al., 2012 USA: 10-Jan-2010
EV-A92 rhmk/cg8420/USA/2014 VP2(p)/VP3(p) 1016 KT961637 Kapusinszky et al., unpub.  
EV-A92 rhmk/cg2548/USA/2014 VP2(p)/VP3(p) 1073 KT961638 Kapusinszky et al., unpub.  
EV-A92 rhmk/cg4770/USA/2014 VP4-VP1(p) 2266 KT961646 Kapusinszky et al., unpub.  
EV-A92 rhmk/cg5451/USA/2014 VP1(p)-3D(p) 4081 KT961650 Kapusinszky et al., unpub.  
EV-A92 agm/CHN/BJ/2018-1A CG(p) 7370 MN427525 Li et al., 2020  
             

Enterovirus A114 (EV-A114)
EV-A114 BAN-11610 VP1 n/a Oberste et al., unpub.
EV-A114 V13-0285/IND/2013 CG(p) 7317 KU355876 Deshpande et al., 2016  
             

Enterovirus A119 (EV-A119)
EV-A119 hu/09C13CMR (Cameroon) VP2(p) to 2A(p) 1863 KC787153 Ayukekbong et al., 2013
EV-A119 gorilla/MB6123/Cameroon VP3(p) to 2A(p) 1266 KF040076 Harvala et al., 2014  
EV-A119 chimp/MB6244/Cameroon VP3(p) to 2A(p) 1266 KF040077 Harvala et al., 2014  
EV-A119 chimp/CPZ_Z046/Cameroon/2008 5'UTR(p) 352 KF614501 Sadeuh-Mba et al., 2014  
VP3(p) to 2A(p) 1487 KF541634  
3D(p) 519 KF648603  
EV-A119 hu/M14100613/CI/2013 VP1 865 KT285372 Di Cristianzano et al., 2015  
             

Enterovirus A120 (EV-A120)
EV-A120 184977-PNG-09 (Papua New Guinea) 5'UTR(p) to 2B(p) 3777 KM198310 Roberts et al., 2016
EV-A120 MAD-2741-11 (Madagascar) CG 7407 LK021688 Razafindratsimandresy et al., 2014  
             

Enterovirus A121 (EV-A121)
EV-A121 V13-0682/IND/2013 CG(p) 7347 KU355877 Deshpande et al., 2016  
             

Enterovirus A122 (EV-A122) [formerly simian virus 19 (SV19)]
EV-A122 SV19-M19s 5'NCR(p) 420 EF364418 Pöyry et al., 1999; Smura et al., 2007  
CG 7373 AF326754 Oberste et al, 2002; Oberste et al, 2007  
EV-A122 SV26-3163 5'NCR(p) 417 EF364419 Pöyry et al., 1999; Smura et al., 2007  
VP1 861 AF326756 Oberste et al, 2002  
3D(p) 489 N/A Pöyry et al., 1999
EV-A122 SV35-A7987 5'NCR(p) 418 EF364421 Pöyry et al., 1999; Smura et al., 2007  
VP1 858 AF326758 Oberste et al, 2002  
3D(p) 489 N/A Pöyry et al., 1999  
EV-A122 USA/GA99-PKm-1 VP1(p) 295 EU194517 Nix et al., 2008  
3D(p) 624 EU194491 Nix et al., 2008  
EV-A122 USA/GA99-RJd-6 VP1(p) 237 EU194525 Nix et al., 2008  
3D(p) 624 EU194499 Nix et al., 2008  
EV-A122 USA/GA99-RTV VP1(p) 295 EU194537 Nix et al., 2008  
3D(p) 624 EU194511 Nix et al., 2008  
EV-A122 USA/GA99-RUh-6 VP1(p) 295 EU194538 Nix et al., 2008  
3D(p) 570 EU194512 Nix et al., 2008  
EV-A122 USA/GA99-RUt-5 VP1(p) 295 EU194539 Nix et al., 2008  
3D(p) 594 EU194513 Nix et al., 2008  
EV-A122 rhmk/WUHARV-EV-2 CG(p) 7128 JX627571 Handley et al., 2012 USA: 10-Jan-2010
EV-A122 rhmk/WUHARV-EV-3 CG(p) 6952 JX627572 Handley et al., 2012 USA: 10-Jan-2010
EV-A122 rhmk/cg2514/USA/2014 2A(p)-2C(p) 1127 KT961640 Kapusinszky et al., unpub.  
EV-A122 rhmk/cg7949/USA/2014 2C(p)-3C(p) 583 KT961644 Kapusinszky et al., unpub.  
EV-A122 rhmk/cg1241/USA/2014 VP4-VP2(p) 922 KT961645 Kapusinszky et al., unpub.  
EV-A122 rhmk/cg5250/USA/2014 VP2(p)-2B(p) 2319 KT961647 Kapusinszky et al., unpub.  
EV-A122 rhmk/cg9811/USA/2014 VP4-2A(p) 2953 KT961648 Kapusinszky et al., unpub.  
EV-A122 rhmk/cg4644/USA/2014 VP4(p)-3D 6439 KT961653 Kapusinszky et al., unpub.  
EV-A122 rhmk/cg4006/USA/2014 5'UTR(p)-3D(p) 6966 KT961654 Kapusinszky et al., unpub.  
EV-A122 rhmk/NOLA-2/USA/2016 CG(p) 7232 MZ312495 Zhao et al., 2019; Mihindukulasuriya et al., 2021  
EV-A122 rhmk/NOLA-4/USA/2016 CG(p) 6907 MZ312493 Zhao et al., 2019; Mihindukulasuriya et al., 2021  
EV-A122 rhmk/NOLA-5/USA/2016 CG(p) 6400 MZ312497 Zhao et al., 2019; Mihindukulasuriya et al., 2021  
             

Enterovirus A123 (EV-A123) [formerly simian virus 43 (SV43)]
EV-A123 SV43-OM112t* CG 7348 AF326761 Oberste et al, 2002; Oberste et al, 2007  
5'NCR(p) 419 EF364422 Pöyry et al., 1999; Smura et al., 2007  
3D(p) 489 N/A Pöyry et al., 1999  
             

Enterovirus A124 (EV-A124) [formerly simian virus 46 (SV46)]
EV-A124 SV46-OM22* CG 7393 AF326764 Oberste et al, 2002; Oberste et al, 2007  
5'NCR(p) 417 EF364423 Pöyry et al., 1999; Smura et al., 2007  
3D(p) 489 N/A Pöyry et al., 1999  
EV-A124 USA/GA99-RDn-4 VP1(p) 295 EU194520 Nix et al., 2008  
3D(p) 624 EU194494 Nix et al., 2008  
EV-A124 USA/GA99-RNm-5
captive Rhesus macaque
(Macaca mulatta) 		CG 7395 EF667343 Oberste et al., 2008  
VP1(p) 295 EU194532 Nix et al., 2008  
3D(p) 624 EU194506 Nix et al., 2008  
EV-A124 USA/GA99-RNo-6 VP1(p) 295 EU194533 Nix et al., 2008  
3D(p) 624 EU194507 Nix et al., 2008  
EV-A124 USA/GA99-RJr-6 VP1(p) 301 EU194546 Nix et al., 2008  
EV-A124 USA/GA99-RKa-1 VP1(p) 297 EU194547 Nix et al., 2008  
EV-A124 USA/GA99-ROi-1 VP1(p) 297 EU194548 Nix et al., 2008  
EV-A124 USA/GA99-RVg-3 VP1(p) 297 EU194550 Nix et al., 2008  
EV-A124 rhmk/cg1338/USA/2014 2C(p)-3C(p) 1375 KT961643 Kapusinszky et al., unpub.  
EV-A124 rhmk/cg4493/USA/2014 2A(p)-3D(p) 3257 KT961649 Kapusinszky et al., unpub.  
EV-A124 rhmk/cg4119/USA/2014 CG(p) 6893 KT961655 Kapusinszky et al., unpub.  
EV-A124 rhmk/cg5400/USA/2014 CG(p) 7121 KT961658 Kapusinszky et al., unpub.  
             

Enterovirus A125 (EV-A125) [formerly baboon enterovirus A13 (A13)]
EV-A125 BA13* CG 7389 AF326750 Oberste et al, 2002; Oberste et al, 2007  
5'NCR(p) 419 EF364414 Pöyry et al., 1999; Smura et al., 2007  
3D(p) 489 N/A Pöyry et al., 1999  
             
CG, complete genome
(p), partial gene sequence
*, prototype strain

References

Handley, S.A., Thackray, L.B., Zhao, G., Presti, R., Miller, A.D., Droit, L., Abbink, P., Maxfield, L.F., Kambal, A., Duan, E., Stanley, K., Kramer, J., Macri, S.C., Permar, S.R., Schmitz, J.E., Mansfield, K., Brenchley, J.M., Veazey, R.S., Stappenbeck, T.S., Wang, D., Barouch, D.H. and Virgin, H.W. (2012). Pathogenic simian immunodeficiency virus infection is associated with expansion of the enteric virome. Cell 151: 253-266.

Li W, Qiang X, Qin S, Huang Y, Hu Y, Bai B, Hou J, Gao R, Zhang X, Mi Z, Fan H, Ye H, Tong Y, Mao P. Virome diversity analysis reveals novel enteroviruses and a human picobirnavirus in stool samples from African green monkeys with diarrhea. Infect Genet Evol. 2020 Aug;82:104279. doi: 10.1016/j.meegid.2020.104279. Epub 2020 Mar 10. PMID: 32165243; PMCID: PMC7102571.

Mihindukulasuriya KA, Droit L, Gilbert MH, Didier PJ, Paredes A, Handley SA, Bohm RP, Wang D. Divergent Enteroviruses from Macaques with Chronic Diarrhea. Microbiol Resour Announc. 2021 Aug 5;10(31):e0069921. doi: 10.1128/MRA.00699-21. Epub 2021 Aug 5. PMID: 34351224.

Zhao G, Droit L, Gilbert MH, Schiro FR, Didier PJ, Si X, Paredes A, Handley SA, Virgin HW, Bohm RP, Wang D. Virome biogeography in the lower gastrointestinal tract of rhesus macaques with chronic diarrhea. Virology. 2019 Jan 15;527:77-88. doi: 10.1016/j.virol.2018.10.001. Epub 2018 Nov 20. PMID: 30468938; PMCID: PMC6333316.