| |
Genus: Enterovirus
Species: Enterovirus F
| Type: enterovirus F1 (EV-F1) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
|
Type: enterovirus F2 (EV-F2) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
|
Type: enterovirus F3 (EV-F3) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
|
Type: enterovirus F4 (EV-F4) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
|
Type: enterovirus F5 (EV-F5) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
|
Type: enterovirus F6 (EV-F6) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
|
Type: enterovirus F7 (EV-F7) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
|
Type: enterovirus F7 (EV-F8) |
|
| 5' UTR |
VP4 |
VP2 |
VP3 |
VP1 |
2A |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
(White areas indicate genes which haven't yet been
sequenced completely;
grey areas are where only partial sequences exist)
References
| Virus |
Strain |
Host |
Region |
Length
|
Accession No. |
Reference |
Comments |
Enterovirus F1 (EV-F1)
|
| EV-F1 |
BEV-261*; M2; RM2 |
Bos taurus |
CG |
7397 |
DQ092770 |
Zell et al.,
2006 |
|
| EV-F1 |
RM2 (=BEV-261*) |
Bos taurus |
5'NCR+P1 |
3321 |
X79369 |
McNally et al., 1994 |
|
| EV-F1 |
BEV-261* (Washington/58) |
Bos taurus |
5'NCR(p) |
377 |
AJ250672 |
Lin et al.,
unpub. |
|
| EV-F1 |
alpaca/IL/USA/2007 |
Vicugna pacos
(alpaca) |
CG |
7433 |
KC748420 |
McClenahan et al.,
2013 |
|
| EV-F1 |
JPN/TottoriU-31/2014 |
Bos taurus |
CG(p) |
7463 |
LC081216 |
Odaka et al.,
unpub. |
|
| EV-F1 |
goat/SD-S67/China/2018 |
goat |
CG |
7455 |
MK639928 |
Chang et al., 2019 |
|
| EV-F1 |
env/NGR_2018 |
sewage |
CG(p) |
7378 |
MN650196 |
Faleye et al.,
unpub. |
|
| |
|
|
|
|
|
|
|
Enterovirus F2 (EV-F2)
|
| EV-F2 |
PS 89* |
Bos taurus |
CG |
7389 |
DQ092795 |
Zell et al.,
2006 |
|
| EV-F2 |
PS 87 (=PS 89) |
Bos taurus |
CG |
7426 |
AY508696 |
Goens et al.,
2004 |
|
| EV-F2 |
Jena
38/02 (Germany) |
Bos
taurus |
5'UTR+P1+P2(p) |
4353 |
DQ092788 |
Zell et al.,
2006 |
|
| 3D |
1463 |
DQ092789 |
Zell et al.,
2006 |
|
| EV-F2 |
Wye-3A |
Bos taurus |
CG |
7450 |
AY508697 |
Goens et al.,
2004 |
|
| EV-F2 |
BJ001 (China,
11-Nov-2009) |
Bos taurus |
CG |
7430 |
HQ663846 |
Peng et al., unpub. |
|
| EV-F2 |
BHM26 (China,
20-Dec-2008) |
Bos taurus |
CG |
7433 |
HQ917060 |
Li et al.,
2012 |
|
| EV-F2 |
BJ50 (China,
20-Dec-2008) |
Bos taurus |
CG |
7416 |
HQ917061 |
Li et al.,
2012 |
|
| EV-F2 |
Egypt/2014 |
Bos taurus |
CG |
7417 |
KM667941 |
Sobhy et al.,
unpub. |
|
| |
|
|
|
|
|
|
|
Enterovirus F3 (EV-F3)
|
| EV-F3 |
PS87/Belfast*; ATCC
VR-774 |
Bos taurus |
CG |
7394 |
DQ092794 |
Zell et al.,
2006 |
|
| EV-F3 |
PSU 87 (Pennsylvania/57) |
Bos taurus |
5'NCR+P1 |
3321 |
X79368 |
McNally et al., 1994 |
|
| EV-F3 |
F266a (Surrey,
England, 1962) |
Bos taurus |
CG |
7393 |
n/a |
Knowles et al., unpub. |
|
| EV-F3 |
M134b (Great
Britain) |
Bos taurus |
CG(p) |
7360 |
n/a |
Knowles et al., unpub. |
|
| EV-F3 |
IS2/Bos
taurus/JPN/1990 |
Bos taurus |
CG |
7394 |
LC150010 |
Tsuchiaka et al.,
2017 |
|
| EV-F3 |
Ho12/Bos
taurus/JPN/2009 |
Bos taurus |
CG(p) |
7350 |
LC150008 |
Tsuchiaka et al.,
2017 |
|
| |
|
|
|
|
|
|
|
Enterovirus F4 (EV-F4)
|
| EV-F4 |
W1* (New
Zealand) |
Trichosurus vulpecula
(brushtail possum) |
CG |
7390 |
AY462106 |
Zheng, 2007 |
|
| EV-F4 |
W6 (New
Zealand) |
Trichosurus vulpecula
(brushtail possum) |
CG |
7391 |
AY462107 |
Zheng, 2007 |
|
| |
|
|
|
|
|
|
|
Enterovirus F5 (EV-F5)
|
| EV-F5 |
M80*
(Norfolk, England, 1960) |
Bos
taurus |
CG(p) |
7361 |
n/a |
Knowles et al., unpub. |
|
| |
|
|
|
|
|
|
|
Enterovirus F6 (EV-F6)
|
| EV-F6 |
T11f*
(Great Britain, 1960) |
Bos
taurus |
CG(p) |
7358 |
n/a |
Knowles et al., unpub. |
|
| |
|
|
|
|
|
|
|
Enterovirus F7 (EV-F7)
|
| EV-F7 |
yak/SWUN-AB001/China/2014 |
Bos grunniens
(Yak) |
CG |
7382 |
KU955844 |
He et al.,
2016 |
|
|
EV-F7 |
yak/S1/CHA/2013 |
Bos grunniens (Yak) |
5'UTR(p) |
555 |
KM822578 |
He et al., 2016 |
|
|
EV-F7 |
yak/S6/CHA/2013 |
Bos grunniens (Yak) |
5'UTR(p) |
556 |
KM822579 |
He et al., 2016 |
|
|
EV-F7 |
yak/S11/CHA/2013 |
Bos grunniens (Yak) |
5'UTR(p) |
558 |
KM822580 |
He et al., 2016 |
|
|
EV-F7 |
yak/S15/CHA/2013 |
Bos grunniens (Yak) |
5'UTR(p) |
556 |
KM822581 |
He et al., 2016 |
|
|
EV-F7 |
yak/S16/CHA/2013 |
Bos grunniens (Yak) |
5'UTR(p) |
558 |
KM822582 |
He et al., 2016 |
|
|
EV-F7 |
yak/S17/CHA/2013 |
Bos grunniens (Yak) |
5'UTR(p) |
556 |
KM822583 |
He et al., 2016 |
|
| |
|
|
|
|
|
|
|
Enterovirus F8 (EV-F8)
|
| EV-F8 |
AN12/JPN/2014 |
Bos Taurus |
CG |
7414 |
LC038188 |
Tsuchiaka et al.,
2017 |
|
| |
|
|
|
|
|
|
|
Enterovirus F?
|
| EV-F? |
Wye 8844 (USA) |
Bos taurus |
5'UTR(p) |
302 |
AY724744 |
Goens et al.,
2004 |
|
| EV-F? |
Wye 8875 (USA) |
Bos taurus |
5'UTR+VP4(p) |
1000 |
AY724745 |
Goens et al.,
2004 |
|
| EV-F? |
BAN/2007/706589 |
Trachypithecus pileatus
(capped langur) |
VP1(p) |
219 |
JX538037 |
Oberste et al.,
2013 |
|
| EV-F? |
HeN-YR91/China/2018 |
Bos taurus |
CG |
7460 |
MN598018 |
Lin et al.,
unpub. |
|
| EV-F? |
HB19-1/China/2019 |
Bos taurus |
CG(p) |
7357 |
MW468092 |
Ji et al.,
unpub. |
|
| |
|
|
|
|
|
|
|
CG, complete genome
(p), partial gene sequence
*, prototype strain |
References
Chang X, Lin Q, Hu J, Wang X, Li X, Cai M, Wang W,
Zhang Z, Wang X. Discovery of a virus of the species Enterovirus F in
goats. Arch Virol. 2019 Jul 18. doi: 10.1007/s00705-019-04331-9. [Epub
ahead of print] PubMed PMID: 31321588.
He, H., Tang, C., Chen, X., Yue, H., Ren, Y., Liu, Y.
and Zhang, B. (2016). Isolation and characterization of a new
enterovirus F in yak feces in the Qinghai-Tibetan Plateau. Arch Virol.
2016 Oct 25 [Epub ahead of print].
Goens, S.D., Botero, S., Zemla, A., Zhou, C.E. and
Perdue, M.L. (2004). Bovine enterovirus 2: complete genomic sequence
and molecular modelling of a reference strain and a wild-type
isolate from endemically infected US cattle. J. gen. Virol. 85:
3195-3203.
Li, Y., Chang, J., Wang, Q., Yu, L. (2012).
Isolation of two Chinese bovine enteroviruses and sequence analysis
of their complete genomes. Arch. Virol. 157: 2369-2375.
McClenahan, S.D., Scherba, G., Borst, L., Fredrickson,
R.L., Krause, P.R. and Uhlenhaut, C. (2013) Discovery of a bovine
enterovirus in alpaca. PLoS ONE 8(8): e68777.
McNally, R.M.P., Earle, J.A.P., McIlhatton, M.,
Hoey, E.M., Martin, S.J. (1994). The nucleotide sequence of the 5'
non-coding and capsid coding genome regions of two bovine
enterovirus strains. Arch. Virol. 139: 287-299.
Oberste, M.S., Feeroz, M.M., Maher, K., Nix, W.A.,
Engel, G.A., Hasan, K.M., Begum, S., Oh, G., Chowdhury, A.H.,
Pallansch, M.A. and Jones-Engel, L. (2013). Characterizing the
picornavirus landscape among synanthropic nonhuman primates in
Bangladesh, 2007 to 2008. J. Virol. 87: 558-571.
Tsuchiaka, S., Rahpaya, S.S., Otomaru, K., Aoki, H.,
Kishimoto, M., Naoi, Y., Omatsu, T., Sano, K., Okazaki-Terashima, S.,
Katayama, Y., Oba, M., Nagai, M. and Mizutani, T. (2017). Identification
of a novel bovine enterovirus possessing highly divergent amino acid
sequences in capsid protein. BMC Microbiol. 17: 18.
Zell,
R., Krumbholz, A., Dauber, M., Hoey, E., Wutzler, P. (2006).
Molecular-based reclassification of the bovine enteroviruses. J. Gen.
Virol. 87: 375-385.
Zheng T. (2007). Characterisation of two enteroviruses isolated from
Australian brushtail possums (Trichosurus vulpecula) in New
Zealand. Arch. Virol. 152: 191-198. Epub 2006 Aug 17.
Zheng, T. and Chiang, H.C. (2007). Oral challenge of brushtail
possums (Trichosurus vulpecula) with possum enteroviruses:
clinical observation, antibody response and virus excretion in
faeces. NZ Vet. J. 55: 217-221.
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