|
Genus: Avihepatovirus
Species: Avihepatovirus A (formerly named
Duck hepatitis A virus)
Serotype:
duck hepatitis A virus 1 (DHAV-1)
(formerly duck hepatitis virus 1 [DHV-1]) |
|
5' UTR |
VP0 |
VP3 |
VP1 |
2A1 |
2A2 |
2A3 |
2B |
2C |
3A |
3B |
3C |
3D |
3' UTR |
|
|
|
(DHV-1 may contain 1, 2 or 3 2A genes) |
(White areas indicate genes which haven't yet been
sequenced completely;
grey areas are where only partial sequences exist)
Virus |
Strain |
Region |
Length* |
Accession No. |
Reference |
Comments |
Duck hepatitis A virus 1 (DHAV-1)
|
DHAV-1 |
03D/Taiwan |
CG |
7687 |
DQ249299 |
Tseng et al., 2007 |
2-3 U's missing
from the 5' end |
DHAV-1 |
H/UK |
CG |
7664 |
DQ249300 |
Tseng et al., 2007 |
20-21 nt missing
from the 5' end |
DHAV-1 |
5886/USA |
CG |
7672 |
DQ249301 |
Tseng et al., 2007 |
16-17 nt missing
from the 5' end |
DHAV-1 |
R85952 (ATCC VR-191) |
CG |
7690 |
DQ226541 |
Kim et al., 2006 |
|
DHAV-1 |
DRL-62 (ATCC VR-1313) |
CG |
7691 |
DQ219396 |
Kim et al., 2006 |
|
DHAV-1 |
C80 |
CG |
7689 |
DQ864514 |
Ding and Zhang, 2007 |
China |
DHAV-1 |
E63 |
3D(p)+3'UTR |
1228 |
DQ864515 |
Ding and Zhang,
unpub. |
China |
DHAV-1 |
A66 |
CG |
7703 |
DQ886445 |
Zhang et al., unpub.
(a) |
China; serial passage in
chicken embryos |
DHAV-1 |
JX |
CG |
7582 |
EF093502 |
Zhang et al., unpub.
(b) |
China:Jiangxia; nts missing
from
5' and 3' terminii |
DHAV-1 |
JX |
CG |
7690 |
EU371557 |
Feng et al., unpub.. |
China |
DHAV-1 |
Sichuan |
3D(p) |
440 |
EF064886 |
Yang et al.,
2008 |
China |
DHAV-1 |
S |
CG |
7696 |
EF417871 |
Feng et al., unpub. |
China: Beijing, ShunYi area |
DHAV-1 |
ZJ |
CG |
7712 |
EF382778 |
Liu et al., 2008 |
southeast China;
BHK-21 passaged virus |
DHAV-1 |
ZJ-A |
VP1 |
714 |
EF442072 |
Liu et al., 2008 |
southeast China; vaccine
strain;
modified live
virus |
DHAV-1 |
ZJ-A2 |
VP1 |
714 |
EF502172 |
Liu et al., 2008 |
China: Zhejiang (vaccine str.) |
DHAV-1 |
SY1 |
VP1 |
714 |
EF407857 |
Liu et al., 2008 |
|
DHAV-1 |
SY2 |
VP1 |
714 |
EF407858 |
Liu et al., 2008 |
|
DHAV-1 |
SY3 |
VP1 |
714 |
EF407859 |
Liu et al., 2008 |
|
DHAV-1 |
SY4 |
VP1 |
714 |
EF407860 |
Liu et al., 2008 |
|
DHAV-1 |
SY5 |
VP1 |
714 |
EF407861 |
Liu et al., 2008 |
|
DHAV-1 |
SY6 |
VP1 |
714 |
EF407862 |
Liu et al., 2008 |
|
DHAV-1 |
AV2111 |
VP1 |
714 |
EF442073 |
Liu et al., 2008 |
virulent strain |
DHAV-1 |
ZI07-1 |
VP1 |
714 |
EF502168 |
Liu et al., 2008 |
China: Zhejiang |
DHAV-1 |
ZI07-2 |
VP1 |
714 |
EF502169 |
Liu et al., 2008 |
China: Zhejiang |
DHAV-1 |
ZI07-3 |
VP1 |
714 |
EF502170 |
Liu et al., 2008 |
China: Zhejiang |
DHAV-1 |
SH |
VP1 |
714 |
EF502171 |
Liu et al., 2008 |
China: Shanghai (vaccine str.) |
DHAV-1 |
HP-1 |
CG |
7665 |
EF151312 |
Luo et al., 2008 |
|
DHAV-1 |
E53 |
CG |
7662 |
EF151313 |
Luo et al., 2008 |
|
DHAV-1 |
R |
3D |
1147 |
EF515838 |
Luo et al., unpub. (a) |
China |
CG |
7703 |
EF585200 |
Luo et al., 2008 |
DHAV-1 |
HSS |
CG |
7691 |
DQ812092 |
Kim et al., 2007b |
South Korea, 1995 |
DHAV-1 |
HS |
CG |
7691 |
DQ812094 |
Kim et al., 2007b |
South Korea, 1994 |
DHAV-1 |
E42 |
2A-AIG1(p) |
483 |
EF636608 |
Jiang et al., unpub. |
China |
DHAV-1 |
E3 |
2A-AIG1(p) |
498 |
EF636609 |
Jiang et al., unpub. |
China |
DHAV-1 |
JX |
2A-AIG1(p) |
498 |
EF636610 |
Jiang et al., unpub. |
China |
DHAV-1 |
PX |
2A-AIG1(p) |
498 |
EF636611 |
Jiang et al., unpub. |
China |
DHAV-1 |
XZ |
VP1 |
714 |
EF653378 |
Wang et al., unpub. |
China: XuZhou |
DHAV-1 |
F |
CG |
7691 |
EU264072 |
Wu et al., unpub. |
China: Fang-Shan area, BeiJing |
DHAV-1 |
C-XNH |
P1 |
2193 |
EU106090 |
Wang & Zhang, unpub. |
China: TianJin |
3D(p) |
440 |
EU106098 |
DHAV-1 |
C-NMG |
P1 |
2193 |
EU106091 |
Wang & Zhang, unpub. |
China |
3D(p) |
440 |
EU106099 |
DHAV-1 |
C-QYD |
P1 |
2193 |
EU106092 |
Wang & Zhang, unpub.. |
China: Beijing; 2006 |
3D(p) |
440 |
EU106100 |
DHAV-1 |
C-CQ5 |
P1 |
2193 |
EU106093 |
Wang & Zhang, unpub. |
China: ChongQing; 2006 |
3D(p) |
440 |
EU106101 |
DHAV-1 |
C-PX |
P1 |
2193 |
EU106094 |
Wang & Zhang, unpub. |
China: JiangSu; 2005 |
3D(p) |
440 |
EU106102 |
DHAV-1 |
C-C1H |
P1 |
2193 |
EU106095 |
Wang & Zhang, unpub. |
China |
3D(p) |
440 |
EU106103 |
DHAV-1 |
C-SN |
P1 |
2193 |
EU106096 |
Wang & Zhang, unpub. |
China: HeBei; 2001 |
3D(p) |
440 |
EU106104 |
DHAV-1 |
C-ZC |
P1 |
2193 |
EU106097 |
Wang & Zhang, unpub. |
China: ShanDong; 2005 |
3D(p) |
440 |
EU106105 |
DHAV-1 |
JH2 |
CG |
7708 |
EU395435 |
Ma et al., unpub. |
China |
DHAV-1 |
JH1 |
CG |
7709 |
EU395436 |
Ma et al., unpub. |
China |
DHAV-1 |
YN |
CG |
7708 |
EU395437 |
Ma et al., unpub. |
China |
DHAV-1 |
FS |
CG |
7707 |
EU395438 |
Ma et al., unpub. |
China |
DHAV-1 |
ZZ |
CG |
7708 |
EU395439 |
Ma et al., unpub. |
China |
DHAV-1 |
Vaccine strain |
CG |
7711 |
EU395440 |
Ma et al., unpub. |
China |
DHAV-1 |
CL |
CG |
7709 |
EF427899 |
Ma et al., unpub. |
China |
DHAV-1 |
YZ |
CG |
7713 |
EF427900 |
Ma et al., unpub. |
China |
DHAV-1 |
161/79/V |
CG |
7669 |
EU753359 |
Gan et al., unpub. |
China: JiangSu; June 2003 |
DHAV-1 |
GZ |
CG |
7710 |
EU888310 |
Xu et al., unpub. |
China: Guangzhou; Mar 2003 |
DHAV-1 |
HDHV1-BJ |
CG |
7712 |
FJ157172 |
Chen, unpub. |
China |
DHAV-1 |
HDHV1-JX |
CG |
7712 |
FJ157173 |
Chen, unpub. |
China |
DHAV-1 |
HDHV1-SC |
CG |
7712 |
FJ157174 |
Chen, unpub. |
China |
DHAV-1 |
HDHV1-GS |
CG |
7712 |
FJ157175 |
Chen, unpub. |
China |
DHAV-1 |
HDHV1-ZJ |
CG |
7712 |
FJ157176 |
Chen, unpub. |
China |
DHAV-1 |
HDHV1-HN |
CG |
7712 |
FJ157177 |
Chen, unpub. |
China |
DHAV-1 |
HDHV1-SH |
CG |
7712 |
FJ157178 |
Chen, unpub. |
China |
DHAV-1 |
HDHV1-GD |
CG |
7712 |
FJ157179 |
Chen, unpub. |
China |
DHAV-1 |
HDHV1-HB |
CG |
7712 |
FJ157180 |
Chen, unpub. |
China |
DHAV-1 |
GHZ04 |
CG |
7716
|
FJ496339 |
Zhang et al., unpub. |
China: Guangdong, Huizhou,
2004 |
DHAV-1 |
FFZ05 |
CG |
7706 |
FJ496340 |
Zhang et al., unpub. |
China: Fujian, Fuzhou, 2005 |
DHAV-1 |
GFS06 |
CG |
7708 |
FJ496341 |
Zhang et al., unpub. |
China: Fujian, Fuzhou, 2005 |
DHAV-1 |
GQY07 |
CG |
7706 |
FJ496342 |
Zhang et al., unpub. |
China: Guangdong, Qingyuan,
2007
|
DHAV-1 |
X |
CG |
7709 |
FJ496343 |
Zhang et al., unpub. |
China: vaccine strain
|
DHAV-1 |
GFS99 |
CG |
7707 |
FJ496344 |
Zhang et al., unpub. |
China: Guangdong, Foshan,
1999 |
DHAV-1 |
LY0801 |
CG |
7699 |
FJ436047 |
Gao et al., unpub. |
China: Jan 2008 |
DHAV-1 |
C-DXX |
VP1 |
714 |
FJ626664 |
Peng et al., unpub. |
China: 02-Aug-2005 |
DHAV-1 |
C-LGZ |
VP1 |
714 |
FJ626666 |
Peng et al., unpub. |
China: 23-Nov-2005 |
DHAV-1 |
C-PHG |
VP1 |
714 |
FJ626668 |
Peng et al., unpub. |
China: 26-Aug-2005 |
DHAV-1 |
C-QDY |
VP1 |
714 |
FJ626671 |
Peng et al., unpub. |
China: 27-Oct-2005 |
DHAV-1 |
SG |
CG |
7699 |
FJ971623 |
Liu et al., unpub. |
China: Apr-2007 |
DHAV-1 |
NA |
CG |
7692 |
GQ130377 |
Wang et al., 2008 |
China: 2008 |
DHAV-1 |
C-LGJ |
CG |
7689 |
GU066819 |
Pan et al., unpub. |
China |
DHAV-1 |
C-XNH |
CG |
7689 |
GU066820 |
Pan et al., unpub. |
China |
DHAV-1 |
C-QYD |
CG |
7690 |
GU066825 |
Pan et al., unpub. |
China |
DHAV-1 |
MY |
CG |
7692 |
GU944671 |
Xia et al., unpub. |
China: Jan-2006 |
DHAV-1 |
MY |
VP1 |
714 |
GU363950 |
Lu et al., unpub. |
China |
DHAV-1 |
VXXT |
CG |
7703 |
JF914945 |
Doan et al., unpub. |
Vietnam: 2007; vaccine strain |
DHAV-1 |
GL08 |
VP1 |
714 |
JF925122 |
Doan et al., unpub. |
Vietnam: 2008 |
DHAV-1 |
SY07 |
VP1 |
711 |
JF437537 |
Li et al., unpub. |
China: 2007 |
DHAV-1 |
SY0812 |
VP1 |
714 |
JF437538 |
Li et al., unpub. |
China: Dec-2008 |
DHAV-1 |
ZJ0706 |
VP1 |
714 |
JF437539 |
Li et al., unpub. |
China: Jun-2007 |
DHAV-1 |
ZJ0809 |
VP1 |
714 |
JF437540 |
Li et al., unpub. |
China: Sep-2008 |
DHAV-1 |
ZJ0812 |
VP1 |
711 |
JF437541 |
Li et al., unpub. |
China: Dec-2008 |
DHAV-1 |
FC64 |
CG |
7696 |
HQ232302 |
Ding et al., unpub. |
China: 2009 |
DHAV-1 |
SH-1 |
CG |
7654 |
HQ232303 |
Ding et al., unpub. |
China: 2010 |
DHAV-1 |
X |
CG(p) |
7683 |
JQ316452 |
Cheng & Wang, unpub. |
China; 5' end missing |
DHAV-1 |
H |
CG |
7768 |
JQ301467 |
Cheng & Wang, unpub. |
China: 1993; extra 79 nt at 5' end |
DHAV-1 |
ZJ |
CG |
7706 |
EU841005 |
He et al., unpub. |
China:Zhanjiang; Mar-2007 |
DHAV-1 |
SH |
CG |
7654 |
HQ265433 |
Song et al., 2014 |
China: 2009 |
DHAV-1 |
duck/CH/LBJ/030423 |
CG |
7705 |
JF828982 |
Liu et al., unpub. |
China: 2003 |
DHAV-1 |
duck/CH/LFJ |
CG |
7703 |
JF828983 |
Liu et al., unpub. |
China: 2009 |
DHAV-1 |
duck/CH/LGD/100913 |
CG |
7705 |
JF828984 |
Liu et al., unpub. |
China: 2010 |
DHAV-1 |
duck/CH/LGD/100915 |
CG |
7705 |
JF828985 |
Liu et al., unpub. |
China: 2010 |
DHAV-1 |
duck/CH/LGD/100916 |
CG |
7705 |
JF828986 |
Liu et al., unpub. |
China: 2010 |
DHAV-1 |
duck/CH/LGD/100922 |
CG |
7705 |
JF828987 |
Liu et al., unpub. |
China: 2010 |
DHAV-1 |
duck/CH/LGD/100928 |
CG |
7705 |
JF828988 |
Liu et al., unpub. |
China: 2010 |
DHAV-1 |
duck/CH/LSD/090830 |
CG |
7705 |
JF828989 |
Liu et al., unpub. |
China: 2009 |
DHAV-1 |
duck/CH/LSD/101003 |
CG |
7703 |
JF828990 |
Liu et al., unpub. |
China: 2009 |
DHAV-1 |
duck/CH/LSD/101004 |
CG |
7702 |
JF828991 |
Liu et al., unpub. |
China: 2010 |
DHAV-1 |
duck/CH/LSD/101006 |
CG |
7703 |
JF828992 |
Liu et al., unpub. |
China: 2010 |
DHAV-1 |
duck/CH/LYN/080704 |
CG |
7703 |
JF828993 |
Liu et al., unpub. |
China: 2008 |
DHAV-1 |
duck/CH/LBJ/090809 |
CG |
7704 |
JF828997 |
Liu et al., unpub. |
China: 2009 |
DHAV-1 |
P16 |
CG |
7704 |
JF828998 |
Liu et al., unpub. |
China |
DHAV-1 |
P29 |
CG |
7704 |
JF828999 |
Liu et al., unpub. |
China |
DHAV-1 |
P40 |
CG |
7707 |
JF829000 |
Liu et al., unpub. |
China |
DHAV-1 |
duck/Vietnam/VXXT/2007 |
CG |
7703 |
JF914945 |
Doan et al., unpub. |
vaccine strain |
DHAV-1 |
duck/China/HB02/2011 |
CG |
7688 |
JQ031262 |
Hu et al., unpub. |
|
DHAV-1 |
duck/China/LGD/111238/2011 |
CG |
7704 |
JQ804521 |
Liu et al., unpub. |
|
DHAV-1 |
duck/China/LGD/111239/2011 |
CG |
7704 |
JQ804522 |
Liu et al., unpub. |
|
DHAV-1 |
ZJ-A (att. vaccine strain) |
CG |
7690 |
JQ808452 |
Liu, unpub. |
China; Jan-2010 |
DHAV-1 |
duck/China/SY5/2008 |
CG |
7690 |
JQ808453 |
Liu, unpub. |
Zhe Jiang Province |
DHAV-1 |
duck/China/FZ86/1986 |
CG |
7703 |
JX390982 |
Shi et al., unpub. |
|
DHAV-1 |
duck/China/FZ05/2005 |
CG |
7703 |
JX390983 |
Shi et al., unpub. |
|
DHAV-1 |
duck/China/FZ99/1999 |
CG |
7711 |
JX390984 |
Shi et al., unpub. |
|
DHAV-1 |
duck/China/SD/1/2009 |
2C |
999 |
JX183548 |
Yang et al., 2012 |
|
DHAV-1 |
pigeon/China/FJ1220/2012 |
CG |
7708 |
KC904272 |
Shi et al., 2013 |
|
DHAV-1 |
duck/LQ1/China/2008 |
VP1 |
714 |
KF826747 |
Ma et al., 2015 |
|
DHAV-1 |
duck/LQ2/China/2008 |
VP1 |
714 |
KF826748 |
Ma et al., 2015 |
|
DHAV-1 |
duck/LQ3/China/2009 |
VP1 |
714 |
KF826749 |
Ma et al., 2015 |
|
DHAV-1 |
duck/LQ4/China/2009 |
VP1 |
714 |
KF826750 |
Ma et al., 2015 |
|
DHAV-1 |
duck/LQ5/China/2009 |
VP1 |
714 |
KF826751 |
Ma et al., 2015 |
|
DHAV-1 |
duck/LQ7/China/2009 |
VP1 |
714 |
KF826752 |
Ma et al., 2015 |
|
DHAV-1 |
duck/LQ8/China/2009 |
VP1 |
714 |
KF826753 |
Ma et al., 2015 |
|
DHAV-1 |
duck/DZ/China/2011 |
VP1 |
714 |
KF826754 |
Ma et al., 2015 |
|
DHAV-1 |
duck/HY/China/2011 |
VP1 |
714 |
KF826755 |
Ma et al., 2015 |
|
DHAV-1 |
duck/CP/China/2012 |
VP1 |
714 |
KF826760 |
Ma et al., 2015 |
|
DHAV-1 |
duck/HCZY/China/2012 |
VP1 |
714 |
KF826761 |
Ma et al., 2015 |
|
DHAV-1 |
duck/JNI/China/2012 |
VP1 |
714 |
KF826764 |
Ma et al., 2015 |
|
DHAV-1 |
duck/MPZJ1206/China/2011 |
CG |
7703 |
KF924552 |
Fu et al., unpub. |
Muscovy duck |
DHAV-1 |
duck/CH2012/China/2012 |
CG |
7690 |
KF953535 |
Zhang et al.,
unpub. |
Muscovy duck |
DHAV-1 |
duck/GD/China/2012 |
CG |
7702 |
KM017068 |
Ren, unpub. |
Anas platyrhynchos |
DHAV-1 |
duck/CH/JS2013 |
CG |
7691 |
KP721458 |
Zhao et al.,
unpub. |
|
DHAV-1 |
duck/CH60/China/2000
(vaccine strain) |
CG |
7690 |
KU923754 |
Cheng et al.,
unpub. |
|
DHAV-1 |
duck/LY0802 |
CG |
7710 |
KX242347 |
Chen et al.,
unpub. |
|
DHAV-1 |
duck/FC16115/China/2016 |
CG(p) |
7685 |
MG515248 |
Zhang, unpub. |
|
DHAV-1 |
du/DH/LGD111238/China/2011 |
CG |
7703 |
MK371020 |
Liu, unpub. |
|
DHAV-1 |
du/DH/LSD111239/China/2011 |
CG |
7703 |
MK371021 |
Liu, unpub. |
|
DHAV-1 |
du/DH/LSD120220/China/2012 |
CG |
7794 |
MK371022 |
Liu, unpub. |
|
DHAV-1 |
du/DH/LSD120223/China/2012 |
CG |
7788 |
MK371023 |
Liu, unpub. |
|
DHAV-1 |
du/DH/LSD120225/China/2012 |
CG |
7785 |
MK371024 |
Liu, unpub. |
|
DHAV-1 |
duck/FJ15/China/2015 |
CG(p) |
7654 |
MK294345 |
Yang et al.,
unpub. |
|
DHAV-1 |
duck/SH02/China/2019 |
CG(p) |
7660 |
MN442318 |
Ding & Wang, unpub. |
|
DHAV-1 |
goose/CHN/SD01/2018 |
CG |
7702 |
MT767251 |
Zhu & Wang, unpub. |
goose |
DHAV-1 |
duck/Egypt-14/2019 |
CG |
7703 |
MZ004919 |
Rohaim et al.,
2021 |
Anas platyrhynchos |
DHAV-1 |
duck/Egypt-2/2018 |
CG |
7702 |
MZ004920 |
Rohaim et al.,
2021 |
Anas platyrhynchos |
DHAV-1 |
duck/Egypt-10/2019 |
CG |
7704 |
MZ004921 |
Rohaim et al.,
2021 |
Anas platyrhynchos |
DHAV-1 |
duck/Egypt-13/2020 |
CG |
7702 |
MZ004922 |
Rohaim et al.,
2021 |
Anas platyrhynchos |
DHAV-1 |
duck/Egypt-4/2020 |
CG |
7702 |
MZ004923 |
Rohaim et al.,
2021 |
Anas platyrhynchos |
|
|
|
|
|
|
|
CG = complete genome.
(p) = partial gene sequence.
* length with poly(A) tails removed. |
Ding, C. and Zhang, D. (2007). Molecular analysis
of duck hepatitis virus type 1. Virology
361: 9-17. Ding, C.Y. and
Zhang, D.B. Using 3'RACE to determine the 3'terminal sequence of genome
RNA of duck hepatitis virus. Unpublished. Feng,
L.F., Wu, P.F., Zhang, G.Z., Su, J.L. and Han, B. Genome analysis of
Duck hepatitis virus type 1 strain S. Unpublished. [College of
Veterinary Medicine, China Agricultural University, Yuanmingyuan West
Road No. 2, Beijing 100094, China] Feng, L.F., Wu,
P.F., Zhang, G.Z., Han, B. and Su, J.L. Genome analysis of Duck
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