The
Picornavirus
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Same level |
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Genera |
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VIPERdb - Virus Particle Explorer
Genus: Enterovirus
| PV-1 5-fold axis | PV-1 2-fold axis | PV-1 3-fold axis |
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| PV-1 (2plv) | PV-2 (1eah) | PV-3 (1pvc) |
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| CVA21 (1z7s) | CVB3 (1cov) | SVDV (1oop) |
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| CVA9 (1d4m) | E1 (1ev1) | E7 + DAF (1m11) |
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| E11 (1h8t) | E12 + DAF (1upn) | BEV-1 (1bev) |
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| Virus | PDB no. | Description [EMBL accession no.] | Reference |
| PV-1 | 2plv | Poliovirus 1 Mahoney [J02281; V01148; V01149] | Hogle et al., 1985 |
| 1pov | Poliovirus 1 native empty capsid. Heterogen: ligand unidentified experimentally but presumed to be a lipid and modeled as sphingosine | Basavappa et al., 1994 | |
| 1fpt | IgG2a FAb fragment (c3) complexed with poliovirus type 1 (Mahoney) fragment (residues 86 - 103) | ||
| 1vbd | Poliovirus 1 Mahoney complexed with R78206 | Grant et al., 1994 | |
| 1rdr | Poliovirus 1 Mahoney - 3D polymerase | Hansen et al., 1997 | |
| 1l1n | 3C protease (PV-1 Mahoney) | ||
| PV-2/PV-1 | N/A | Chimera | Yeates et al., 1991 |
| PV-2 | 1eah | Poliovirus 2 Lansing complexed with antiviral agent SCH48973 | Lentz et al., 1997 |
| PV-3 | 1pvc | Poliovirus 3 Sabin (P3/Leon/12a(1)b) [K00043] | Filman et al., 1989 |
| 1piv | Poliovirus 3 Sabin (P3/Sabin; P3/Leon/12a(1)b) complexed with disoxaril (WIN 51711) | ||
| 1vba | Poliovirus 3 Sabin (P3/Sabin; P3/Leon/12a(1)b) complexed with R78206 | Grant et al., 1994 | |
| 1vbb | Poliovirus 3 Sabin (P3/Sabin; P3/Leon/12a(1)b) complexed with R80633 | Grant et al., 1994 | |
| 1vbc | Poliovirus 3 Sabin (P3/Sabin; P3/Leon/12a(1)b) complexed with R77975 | Grant et al., 1994 | |
| 1vbe | Poliovirus 3 Sabin (P3/Sabin; P3/Leon/12a(1)b) mutant 242-H2 complexed with R78206 | Grant et al., 1994 | |
| PV-? | 1nn8 | CRYO-EM STRUCTURE OF POLIOVIRUS RECEPTOR BOUND TO POLIOVIRUS | He et al. |
| CVA21 | 1z7s | Coxsackievirus A21 Kuykendall | C.Xiao, C.M.Bator-Kelly, E.Rieder, P.R.Chipman, A.Craig, R.J.Kuhn, E.Wimmer, M.G.Rossmann |
| CVA24 | 4Q4V | CVA24v/110390/Malaysia/2002 [KF725085] | Zocher et al., 2014 |
| CVA24 | 4Q4W | CVA24v/110390/Malaysia/2002 [KF725085] | Zocher et al., 2014 |
| CVA24 | 4Q4X | CVA24v/110390/Malaysia/2002 [KF725085] | Zocher et al., 2014 |
| CVA24 | 4Q4Y | CVA24v/110390/Malaysia/2002 [KF725085] | Zocher et al., 2014 |
| CVA9 | 1d4m | Coxsackievirus A9 Griggs [D00627] | Smyth et al., 1996; Hendry et al., 1999 |
| CVB3 | 1cov | Coxsackievirus B3 M | Muckelbauer et al., 1995 |
| CVB3 + CAR | 1jew | Cyro-EM structure of coxsackievirus B3 (M strain) with its cellular receptor, coxsackievirus and adenovirus receptor (CAR). | He et al., 2001 |
| CVB3 | 1rfr | Structure of the stemloop D subdomain of coxsackievirus B3 cloverleaf RNA | Ohlenschlager et al., 2004 |
| CVB4 | 1z8r | coxsackievirus B4 (JVB Benschoten, New York, 1951) 2Apro | Baxter et al., 2006 |
| SVDV | 1oop | Swine vesicular disease virus (strain UKG/27/72) | Fry et al., 2003 |
| SVDV | 1mqt | Swine vesicular disease virus (strain SPA/2/93) | Verdaguer et al., 2003 |
| E-1 | 1ev1 | Echovirus 1 Farouk [AF029859] | Filman et al., 1998 |
| E-7 | 1m11 | Structural Model Of Human Decay-Accelerating Factor Bound To Echovirus 7 From Cryo-Electron Microscopy | He et al., 2002 |
| E-7 | 2x5i | Crystal Structure Echovirus 7 | Plevka et al., 2010 |
| E-7 | 3iyp | The Interaction Of Decay-Accelerating Factor With Echovirus 7 | Plevka et al., 2010 |
| E-11 | 1h8t | Echovirus 11 | Stuart et al., 2002 |
| E-12 | 1upn | Echovirus 12 Gregory with Domains 3 And 4 Of Its Receptor Decay Accelerating Factor (Cd55) By Cryo Electron Microscopy At 16 A | Bhella et al., 2004 |
| EV-A71 | 4aed | Enterovirus A71 capsid | Plevka et al., 2012 |
| EV-E1 | 1bev | Enterovirus E1 (BEV-1) VG(5)27 [D00214] | Smyth et al., 1995 |
| EV-F3 | 5mqu | Enterovirus F3 (BEV-2) [X79368] | Roedig et al., 2017 |
| PV,
poliovirus CV-A, coxsackievirus A CV-B, coxsackievirus B E, echovirus SVDV, swine vesicular disease virus BEV, Bovine enterovirus |
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References
Basavappa, R., Syed, R., Flore, O., Icenogle, J.P., Filman, D.J. and Hogle, J.M. (1994). Role and mechanism of the maturation cleavage of VP0 in poliovirus assembly: structure of the empty capsid assembly intermediate at 2.9 A resolution. Protein Sci. 3: 1651-1669.
Baxter, N.J., Roetzer, A., Liebig, H.D., Sedelnikova, S.E., Hounslow, A.M., Skern, T. and Waltho, J.P. (2006). Structure and dynamics of coxsackievirus B4 2A proteinase, an enyzme involved in the etiology of heart disease. J. Virol. 80: 1451-1462.
Bhella, D., Goodfellow, I.G., Roversi, P., Pettigrew, D., Chaudhry, Y., Evans, D.J., Lea, S.M. (2004). The structure of echovirus type 12 bound to a two-domain fragment of its cellular attachment protein decay-accelerating factor (CD 55). J. Biol. Chem. 279: 8325-8332.
Filman, D.J., Syed, R., Chow, M., Macadam, A.J., Minor, P.D., Hogle, J.M. (1989). Structural factors that control conformational transitions and serotype specificity in type-3 poliovirus. EMBO J. 8: 1567-1579.
Filman, D.J., Wien, M.W., Cunningham, J.A., Bergelson, J.M. and Hogle, J.M. (1998). Structure determination of echovirus 1. Acta Crystallogr D Biol Crystallogr. 54: 1261-1272.
Fry, E.E., Knowles, N.J., Newman, J.W.I., Wilsden, G., Rao, Z., King, A.M.Q., and Stuart, D.I. (2003). Crystal structure of swine vesicular disease virus and implications for host adaptation. Journal of Virology 77: 5475-5486.
Grant, R.A., Hiremath, C.N., Filman, D.J., Syed, R., Andries, K. and Hogle, J.M. (1994). Structures of poliovirus complexes with anti-viral drugs: implications for viral stability and drug design. Curr. Biol. 4: 784-797.
He, Y., Chipman, P.R., Howitt, J., Bator, C.M., Whitt, M.A., Baker, T.S., Kuhn, R.J., Anderson, C.W., Freimuth, P. and Rossmann, M.G. (2001). Interaction of coxsackievirus B3 with the full length coxsackievirus-adenovirus receptor. Nat. Struct. Biol. 8: 874-878.
He, Y., Lin, F., Chipman, P.R., Bator, C.M., Baker, T.S., Shoham, M., Kuhn, R.J., Medof, M.E. and Rossmann, M.G. (2002). Structure of decay-accelerating factor bound to echovirus 7: a virus-receptor complex. Proc. Natl. Acad. Sci. USA 99: 10325-10329.
Hendry, E., Hatanaka, H., Fry, E., Smyth, M., Tate, J., Stanway, G., Santti, J., Maaronen, M., Hyypia, T. and Stuart, D. (1999). The crystal structure of coxsackievirus A9: new insights into the uncoating mechanisms of enteroviruses. Structure Fold Des. 7: 1527-1538.
Hogle, J.M., Chow, M. and Filman, D.J. (1985). Three-dimensional structure of poliovirus at 2.9 A resolution. Science 229: 1358-1365.
Lentz, K.N., Smith, A.D., Geisler, S.C., Cox, S., Buontempo, P., Skelton, A., Martino, J., De Rozhon, E., Schwartz, J. and Girijavallabhan, V. (1997). Structure of poliovirus type 2 Lansing complexed with antiviral agent SCH48973: comparison of the structural and biological properties of the three poliovirus serotypes. Structure 5: 961-978.
Muckelbauer, J.K., Kremer, M., Minor, I., Diana, G., Dutko, F.J., Groarke, J., Pevear, D.C. and Rossmann, M.G. (1995). The structure of coxsackievirus B3 at 3.5 Angstrom resolution. Structure 3: 653-667.
Ohlenschlager, O., Wohnert, J., Bucci, E., Seitz, S., Hafner, S., Ramachandran, R., Zell, R. and Gorlach, M. (2004). The structure of the stemloop D subdomain of coxsackievirus B3 cloverleaf RNA and its interaction with the proteinase 3C. Structure (Camb) 12: 237-248.
Plevka, P., Perera, R., Cardosa, J., Kuhn, R.J. and Rossmann, M.G. (2012). Crystal structure of human enterovirus 71. Science 336(6086): 1274.
Roedig, P., Ginn, H.M., Pakendorf, T., Sutton, G., Harlos, K., Walter, T.S., Meyer, J., Fischer, P., Duman, R., Vartiainen, I., Reime, B., Warmer, M., Brewster, A.S., Young, I.D., Michels-Clark, T., Sauter, N.K., Kotecha, A., Kelly, J., Rowlands, D.J., Sikorsky, M., Nelson, S., Damiani, D.S., Alonso-Mori, R., Ren, J., Fry, E.E., David, C., Stuart, D.I., Wagner, A. and Meents, A. (2017). High-speed fixed-target serial virus crystallography. Nat. Methods 2017 Jun 19. doi: 10.1038/nmeth.4335. [Epub ahead of print]
Smyth, M., Tate, J., Hoey, E., Lyons, C., Martin, S. and Stuart, D. (1995). Implications for viral uncoating from the structure of bovine enterovirus. Structural Biology 2: 224-231.
Smyth, M., Tate, J., Stuart, D. and Hyypia, T. (1996). Crystal structure of coxsackievirus A9. Europic '96: IXth meeting of the European Study Group on the Molecular Biology of Picornaviruses, Gmunden, Austria, 18-24 May 1996: abstract C6.
Stuart, A.D., McKee, T.A., Williams, P.A., Harley, C., Shen, S., Stuart, D.I., Brown, T.D. and Lea, S,M. (2002). Determination of the structure of a decay accelerating factor-binding clinical isolate of echovirus 11 allows mapping of mutants with altered receptor requirements for infection. J. Virol. 76: 7694-7704.
Verdaguer, N., Jimenez-Clavero, M.A., Fita, I. and Ley, V. (2003). Structure of swine vesicular disease virus: mapping of changes occurring during adaptation of human coxsackie B5 virus to infect swine. J. Virol. 77: 9780-9789.
Yeates, T.O., Jacobson, D.H., Martin, A., Wychowski, C., Girard, M., Filman, D.J. and Hogle, J.M. (1991). Three-dimensional structure of a mouse-adapted type 2/type 1 poliovirus chimera. EMBO Journal 10: 2331-2341.
Zocher, G., Mistry, N., Frank, M., Hähnlein-Schick, I., Ekström, J.O., Arnberg, N. and Stehle, T. (2014). A Sialic acid binding site in a human picornavirus. PLoS Pathog. 2014 Oct 16;10(10):e1004401. doi: 10.1371/journal.ppat.1004401. eCollection 2014 Oct. PubMed PMID: 25329320.