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 Enterovirus G

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EV-G seqs
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The species Enterovirus G (formerly named Porcine enterovirus B) consists of a twenty-eight (sero)types: EV-G1 to EV-G28 (Table 1).

The original porcine enterovirus (PEV) 1 to 7 and 11 to 13 have been reclassified and assigned to a new genus, Teschovirus; PEV-8 has been renamed porcine sapelovirus 1 and reclassified in the species Sapelovirus A, genus Sapelovirus.

Examples of EV-G1 (KY498016, KY498017, KY214435 plus 16 others), EV-G2 (LC316791) and EV-G17 (KY761948) have been found which contain an inserted porcine torovirus-like papain-like cysteine protease (PLCP) coding region inserted between 2C and 3A (Conceição-Neto et al., 2017; Knutson et al., 2017; Shang et al., 2017; Tsuchiaka et al., 2018). Interestingly the PLCP regions in the two virus types (G1 and G17) only share 87% nt and 86% aa identities.


Table 1. Enterovirus G prototype strains and their sequences.
Current type Former type Prototype strain Host Accession no.
EV-G1 PEV-9 pig/UKG/410/73 pig AF363453
EV-G2 PEV-10 pig/LP54/England/75 pig AF363455
EV-G3 PEV-14 pig/K23/2008/HUN pig HQ702854
EV-G4 PEV-15 wild boar/WBD/2011/HUN wild boar JN807387
EV-G5 OEV-1 sheep/TB4-OEV/2009/HUN sheep JQ277724
EV-G6 PEV-16 pig/2009/KOR pig JQ818253
EV-G7 - sheep/990/UK-NI sheep MG958646
EV-G8 - pig/724118/2012/Vietnam pig KJ156437
EV-G9 - pig/724162/2012/Vietnam pig KJ156438
EV-G10 - pig/734123/2012/Vietnam pig KJ156446
EV-G11 - pig/744257/2012/Vietnam pig KJ156451
EV-G12 - pig/714036/CaoLanh/VN/2012-02-13 pig KT265880
EV-G13 - pig/714270/CaoLanh/VN/2012-02-16 pig KT265903
EV-G14 - pig/714405/CaoLanh/VN/2012-02-21 pig KT265909
EV-G15 - pig/724307/ChauThanh/VN/2012-03-14 pig KT265941
EV-G16 - wild boar/BS14-173H2 wild boar KT266010
EV-G17 - pig/08/NC_USA/2015 pig KY761948
EV-G18 - pig/GER/F26-2/23-12-2013 pig MF113370
EV-G19 - pig/GER/F8-2/04-02-2013 pig MF113372
EV-G20 - goat/JL14/CHA/2014 goat KU297674
EV-G21 - pig/JPN/Ishi-Ka2/2016 pig LC316832
EV-G22 - takin/LLT03/China/2013 takin MG660831
EV-G23 - goat/SD-S68/China/2018 goat sequence
EV-G24 - goat/THAI/G2055/2016 goat MH894624
EV-G25 - goat/THAI/G2078/2016 goat MH894625
EV-G26 - pig/S5391/Thailand/2016 pig MW732955
EV-G27 - pig/PF100/con/PicV21/China/2018 pig OP414054
EV-G28 - goat/CAF-6AR02-a goat OR096661
Table of nucleotide p-distances between prototype VP1 sequences

References

Conceição-Neto N, Theuns S, Cui T, Zeller M, Yinda CK, Christiaens I, Heylen E, Van Ranst M, Carpentier S, Nauwynck HJ, Matthijnssens J. Identification of an enterovirus recombinant with a torovirus-like gene insertion during a diarrhea outbreak in fattening pigs. Virus Evol. 2017 Sep 8;3(2):vex024. doi: 10.1093/ve/vex024. eCollection 2017 Jul. PubMed PMID: 28924489; PubMed Central PMCID: PMC5591953.

Knutson, T.P., Velayudhan, B.T., Marthaler, D.G. (2017). A porcine enterovirus G associated with enteric disease contains a novel papain-like cysteine protease. J. Gen. Virol. 98: 1305-1310. doi: 10.1099/jgv.0.000799.

Shang, P., Misra, S., Hause, B., Fang, Y. (2017). A naturally occurring recombinant enterovirus expresses a torovirus deubiquitinase. J. Virol. 2017 May 10. pii: JVI.00450-17. doi: 10.1128/JVI.00450-17. [Epub ahead of print]

Tsuchiaka S, Naoi Y, Imai R, Masuda T, Ito M, Akagami M, Ouchi Y, Ishii K, Sakaguchi S, Omatsu T, Katayama Y, Oba M, Shirai J, Satani Y, Takashima Y, Taniguchi Y, Takasu M, Madarame H, Sunaga F, Aoki H, Makino S, Mizutani T, Nagai M. Genetic diversity and recombination of enterovirus G strains in Japanese pigs: High prevalence of strains carrying a papain-like cysteine protease sequence in the enterovirus G population. PLoS One. 2018 Jan 11;13(1):e0190819. doi: 10.1371/journal.pone.0190819. eCollection 2018. PubMed PMID: 29324778; PubMed Central PMCID: PMC5764308.

Wang, M., He, J., Lu, H., Liu, Y., Deng, Y., Zhu, L., Guo, C., Tu, C. and Wang, X. (2017). A novel enterovirus species identified from severe diarrheal goats. PLoS One 12(4): e0174600. doi: 10.1371/journal.pone.0174600.

 

 
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